| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,835,370 – 15,835,477 |
| Length | 107 |
| Max. P | 0.585276 |
| Location | 15,835,370 – 15,835,477 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.94 |
| Mean single sequence MFE | -42.98 |
| Consensus MFE | -26.13 |
| Energy contribution | -27.72 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.585276 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15835370 107 + 23771897 -U---GGACAGGACUCAGGUCCUCGUGCUUUUGGAGCGUUUUCGCUAGGGCGGCGAGGGCGUGAAA---------AUGCAGGGAUAUUGCCGAAAGUUUGGUGAUGCUUGCAGGAUGCGC -.---.........(((.(((((((((((((...((((....))))))))).)))))))).)))..---------.((((((..(((..((((....))))..)))))))))........ ( -40.70) >DroSec_CAF1 42461 107 + 1 -U---GGACAGGACUCAGGUCCUCGUGCUUUUGGAGCGUUUUCGCUAGGGCGGCGAGGGCGUGAAA---------AUGCAGGGAUAUUGCCGAAAGUUUGGAGAUGCUCGCAGGAUCCGC -.---(((..((((....))))((.(((.....(((((((((((......((((((..((((....---------)))).......))))))......)))))))))))))).))))).. ( -40.10) >DroSim_CAF1 43642 107 + 1 -U---GGACAGGACUCAGGUCCUCGUGCUUUUGGAGCGUUUUCGCUAGGGCGGCGAGGGCGUGAAA---------AUGCAGGGAUAUUGCCGAAAGUUUGGAGAUGCUCGCAGGAUCCGC -.---(((..((((....))))((.(((.....(((((((((((......((((((..((((....---------)))).......))))))......)))))))))))))).))))).. ( -40.10) >DroEre_CAF1 41497 107 + 1 -U---GGACAGGAUUGAGGUCCUCGUGCUUCUGCAGCGUUUUCGCUAGGGCGGCGAGGGCGUGAAA---------AUGCAGGGAUAUUGCCGAAAUUUUGCAGAUGCUCGCAGGAUCCGC -.---..........(.((((((((.((.(((((((((((((((((.....)))))))))))....---------..((((.....))))........)))))).)).)).))))))).. ( -40.20) >DroYak_CAF1 83782 107 + 1 -U---GGGCAGGACUGAGGUCCUCGUGCUUCUGCAGCGUUUUCGCUAGGGCGGCGAGGGCGUGAAA---------AUGCAGGGAUAUUGCCGAAAUGUUGGAGAUGCUCGCAGGAUCCGC -.---(((((((((....))))).))..((((((((((((((((.((...((((((..((((....---------)))).......))))))...)).)))))))))).)))))).)).. ( -43.40) >DroPer_CAF1 44062 120 + 1 GUGGUCGUCAUGCCCCUGCUCCACCUGCCACUGCAGCGAGGUCGCUAGGGCAGCUCUCGCAUGCAGCAGCAUCUCGUGCAGGGAGAGCGUUGAAAUGCCAGCCAGCGUGGCAGCAACCAC (((((.(((((((((((((.(....(((..((((((((((((.((....)).)).))))).)))))..)))....).))))))...(.((((......))))).)))))))....))))) ( -53.40) >consensus _U___GGACAGGACUCAGGUCCUCGUGCUUCUGCAGCGUUUUCGCUAGGGCGGCGAGGGCGUGAAA_________AUGCAGGGAUAUUGCCGAAAGUUUGGAGAUGCUCGCAGGAUCCGC .....(((......(((.((((((((((((....((((....)))).))))).))))))).)))............(((.(((.(((..((((....))))..)))))))))...))).. (-26.13 = -27.72 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:03:00 2006