Locus 5888

Sequence ID 3L_DroMel_CAF1
Location 15,834,369 – 15,834,469
Length 100
Max. P 0.982815
window9386

overview

Window 6

Location 15,834,369 – 15,834,469
Length 100
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 95.79
Mean single sequence MFE -22.76
Consensus MFE -19.42
Energy contribution -20.22
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -2.07
Structure conservation index 0.85
SVM decision value 1.93
SVM RNA-class probability 0.982815
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15834369 100 - 23771897
AAGAAAUACCAAAAGCUGAGAAUUAUUCGGAAAAAGAGAAAACUCGAGUU-UUUCGUUAUCUCUCUUUCUGGAAUUAUUAAGUUUCGUUUUCUGCACACAC
.(((((.((...(((((...(((..((((((((.(((((.(((.......-....))).))))).))))))))...))).))))).)))))))........ ( -19.90)
>DroSec_CAF1 41442 99 - 1
AAGAAAUACCGAAAGCUGAGAAUUAUUCGGAAAAAGAGAAAACUCAAGUU-U-UGGUUACCUCUUUUUCUGGAAUUAUUAAGUUUCGUUUUCUGCACACAC
.(((((...(((((.((...(((..(((((((((((((..((((......-.-.))))..)))))))))))))...))).))))))).)))))........ ( -25.00)
>DroSim_CAF1 42624 99 - 1
AAGAAAUACCGAAAGCUGAGAAUUAUUCGGAAAAAGAGAAAACUCGAGUU-U-UGGUUACCUCUUUUUCUGGAAUUAUUAAGUUUCGUUUUCUGCACACAC
.(((((...(((((.((...(((..(((((((((((((..((((......-.-.))))..)))))))))))))...))).))))))).)))))........ ( -25.00)
>DroEre_CAF1 40362 99 - 1
AAGAAAUACCGAAAGCUGAGAAUUAUACGGAAAAAGAGAAAACUCGAGUU-U-UGGUUACCUCUUUUACUGGAAUUAUUAAGUUUCGUUUUCCGCACACAC
..((((...(((((..(((.((((...(((.(((((((..((((......-.-.))))..))))))).))).)))).)))..))))).))))......... ( -19.00)
>DroYak_CAF1 82701 100 - 1
AAGAAAUACCGAAAGCUGAGAAUUAUACGGAAAAAGAGAAAACUCGAGUUUU-UGGUUACCUCUUUUUCUGGAAUUAUUAAGUUUCGUUUUCUGCACACAC
.(((((...(((((..(((.((((...(((((((((((..(((.(((....)-)))))..))))))))))).)))).)))..))))).)))))........ ( -24.90)
>consensus
AAGAAAUACCGAAAGCUGAGAAUUAUUCGGAAAAAGAGAAAACUCGAGUU_U_UGGUUACCUCUUUUUCUGGAAUUAUUAAGUUUCGUUUUCUGCACACAC
.(((((...(((((..(((.((((...(((((((((((..(((............)))..))))))))))).)))).)))..))))).)))))........ (-19.42 = -20.22 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:59 2006