Locus 5886

Sequence ID 3L_DroMel_CAF1
Location 15,829,211 – 15,829,330
Length 119
Max. P 0.922892
window9383

overview

Window 3

Location 15,829,211 – 15,829,330
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 97.77
Mean single sequence MFE -27.76
Consensus MFE -26.35
Energy contribution -26.24
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -1.19
Structure conservation index 0.95
SVM decision value 1.15
SVM RNA-class probability 0.922892
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15829211 119 - 23771897
AUUCUAUUUCACCACCGUUUUUAUACCCGGCAUUAUAUUGGUGACGUCGUCCUUUAUAACUUUCUGGCUAGAAUGGAAUGCCGUGCCAGCUAGAUCGAUGAUAGGUAACAA-UACCAAAA
........(((((((((..(....)..)))........))))))(((((.............(((((((.(.((((....)))).).))))))).)))))...((((....-)))).... ( -27.54)
>DroPse_CAF1 36136 120 - 1
AUUCUAUUUCACCACCGUUUUUAUACCUGGCAUUAUAUUGGUGACGUCGUCCUUUAUAACAUUCUGGCUAGAAUGGAAUGCCGUGCCAGCUAGAUCGAUGAUAGGUAACAAACGCCAAAA
...............(((((...((((((.(((((((..((((....)).))..))).....(((((((.(.((((....)))).).)))))))..)))).))))))..)))))...... ( -28.20)
>DroSim_CAF1 37797 119 - 1
AUUCUAUUUCACCACCGUUUUUAUACCCGGCAUUAUAUUGGUGACGUCGUCCUUUAUAACUUUCUGGCUAGAAUGGAAUGCCGUGCCAGCUAGAUCGAUGAUAGGUAACAA-UACCAAAA
........(((((((((..(....)..)))........))))))(((((.............(((((((.(.((((....)))).).))))))).)))))...((((....-)))).... ( -27.54)
>DroEre_CAF1 35733 119 - 1
AUUCUAUUUCACCACCGUUUUUAUACCCGGCAUUAUAUUGGUGACGUCGUCCUUUAUAACUUUCUGGCUAGAAUGGAAUGCCGUGCCAGCUAGAUCGAUGAUAGGUAACAA-UACCAAAA
........(((((((((..(....)..)))........))))))(((((.............(((((((.(.((((....)))).).))))))).)))))...((((....-)))).... ( -27.54)
>DroYak_CAF1 77892 119 - 1
AUUCUAUUUCACCACCGUUUUUAUACCCGGCAUUAUAUUGGUGACGUCGUCCUUUAUAACUUUCUGGCUAGAAUGGAAUGCCGUGCCAGCUAGAUCGAUGAUAGGUAACAA-UACCAAAA
........(((((((((..(....)..)))........))))))(((((.............(((((((.(.((((....)))).).))))))).)))))...((((....-)))).... ( -27.54)
>DroPer_CAF1 38064 120 - 1
AUUCUAUUUCACCACCGUUUUUAUACCUGGCAUUAUAUUGGUGACGUCGUCCUUUAUAACAUUCUGGCUAGAAUGGAAUGCCGUGCCAGCUAGAUCGAUGAUAGGUAACAAACGCCAAAA
...............(((((...((((((.(((((((..((((....)).))..))).....(((((((.(.((((....)))).).)))))))..)))).))))))..)))))...... ( -28.20)
>consensus
AUUCUAUUUCACCACCGUUUUUAUACCCGGCAUUAUAUUGGUGACGUCGUCCUUUAUAACUUUCUGGCUAGAAUGGAAUGCCGUGCCAGCUAGAUCGAUGAUAGGUAACAA_UACCAAAA
........(((((((((..........)))........))))))(((((.............(((((((.(.((((....)))).).))))))).)))))...((((.....)))).... (-26.35 = -26.24 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:56 2006