| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,827,813 – 15,827,907 |
| Length | 94 |
| Max. P | 0.558440 |
| Location | 15,827,813 – 15,827,907 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 92.98 |
| Mean single sequence MFE | -15.74 |
| Consensus MFE | -14.47 |
| Energy contribution | -14.43 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.558440 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15827813 94 - 23771897 UGACUUCUUAACUUAAACUAGGCAAUUUUUGGCUUUUUUACUUUGAGAAGCUUUGGUAAAUCCAUAUACGAAAAUCAACUGAAGCAUACAUAAA ....(((((((..((((..((.((.....)).))..))))..)))))))((((..((....................))..))))......... ( -16.55) >DroSec_CAF1 35170 94 - 1 UGACUUCUUAACUUAAACUAGGCAAUUUUUGGCUUUUUUACUUUGAGAAGCUUUGAUAAAAUCAAAUACGAAAAUCAACUGAAGCAUACAUAAA ((.((((....((......))...((((((((((((((......)))))))((((((...))))))..))))))).....))))))........ ( -14.30) >DroSim_CAF1 36404 94 - 1 UGACUUCUUAACUUAAACUAGGCAAUUUUUGGCUUUUUUACUUUGAGAAGCUUUGGUAAAACCAUAUACGAAAAUCAACUGAAGCAUACAUAAA ....(((((((..((((..((.((.....)).))..))))..)))))))((((..((....................))..))))......... ( -16.55) >DroEre_CAF1 34373 94 - 1 UGACUUCUUAGCUUAAACUAGGCAAUUUUAAGCUUUUUUUCUUUGAGAAGCUUUGGUGAAACCAUAUACGAAAAUCAGCUAAAGCAUACAUACA ....(((((((...(((..((((........))))..)))..)))))))((((((((((...............))).)))))))......... ( -15.76) >DroYak_CAF1 76669 94 - 1 UGACUUCUUAACUUAAACUAGGCAUUUUUAAGCUUUUUUUCUUUAAGAAGCUUUGGUGAAACCAUAUACGAAAAUCAACUGAAGCAUACAUACA ....(((((((...(((..((((........))))..)))..)))))))((((..((....................))..))))......... ( -15.55) >consensus UGACUUCUUAACUUAAACUAGGCAAUUUUUGGCUUUUUUACUUUGAGAAGCUUUGGUAAAACCAUAUACGAAAAUCAACUGAAGCAUACAUAAA ....(((((((..((((..((((........)))).))))..)))))))((((((((....................))))))))......... (-14.47 = -14.43 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:51 2006