| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,827,502 – 15,827,607 |
| Length | 105 |
| Max. P | 0.515511 |
| Location | 15,827,502 – 15,827,607 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 70.83 |
| Mean single sequence MFE | -26.20 |
| Consensus MFE | -13.84 |
| Energy contribution | -14.53 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.53 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.515511 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15827502 105 - 23771897 --------AAUAAAAAAAUGUAUUAUCGUGGUUUUAAGAGCAGGAAAUAAUAUAUUCCAUAU-------GUAGUAUAUUGUUCUCAACCGUUCACAAAGUGAGGCAAGGAUAAUGCGAUU --------..........(((((((((..((((...(((((((...(((.(((((.....))-------))).))).))))))).))))((((((...)))).))...)))))))))... ( -23.70) >DroSim_CAF1 36068 120 - 1 UAUGCUGCGAUAAAAACAUGUAUUAUCGUUGUUUUAGGAGCAGGAAAUAAUAUUUUCCAUAGCUCACUACUAGUAUAUUGUUCUCUACUGGUCACAAAGUGAGACAAGGAUAAUGCGAUU ..................(((((((((.((((((((.((((.(((((......)))))...))))...(((((((..........))))))).......)))))))).)))))))))... ( -33.20) >DroEre_CAF1 33794 117 - 1 AAAGCUGUAGUUAAAAGAUGUACUAUCAGGAUUCUGGGAGCAUCGAAUA---UUUUCCAAGGCUCAGUACUAGUAUAAUGCUCUCAAGUGUACGAGAAGUGAAGCAAGGAUAAUGCGAUU ...((...........(((((....((((....))))..)))))....(---((.(((...(((((.(.((.((((...(((....))))))).)).).)).)))..))).))))).... ( -21.70) >consensus _A_GCUG_AAUAAAAAAAUGUAUUAUCGUGGUUUUAGGAGCAGGAAAUAAUAUUUUCCAUAGCUCA_UACUAGUAUAUUGUUCUCAACUGUUCACAAAGUGAGGCAAGGAUAAUGCGAUU ..................(((((((((.(.(((((((((((((((((......))))).(((.......)))......))))))...............)))))).).)))))))))... (-13.84 = -14.53 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:50 2006