| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,820,559 – 15,820,664 |
| Length | 105 |
| Max. P | 0.852441 |
| Location | 15,820,559 – 15,820,664 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.09 |
| Mean single sequence MFE | -26.90 |
| Consensus MFE | -17.92 |
| Energy contribution | -19.40 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.852441 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15820559 105 - 23771897 ACUGCAUUAGACAUGAGGUACUGGCAGCCAA-AGGAAACAGAAAGGUUAAGCAAUUAGGGCUAAAAGCCAGGCAGGGUUGUCUUUUACCAAAUCAAAUGCAAGCAG-------------- ..((((((.((.....((((..(((((((..-.(....)...........((......(((.....)))..))..)))))))...))))...)).)))))).....-------------- ( -29.10) >DroSec_CAF1 27987 106 - 1 ACUGCAUUAGACAUGAGGUACUGGCAGCCAAAAGGAAACAGAAAGGUUAAGCAAUUAGGGCUAAAAGCCAGGCAGGGUUGUCUUUUACCAAAUCAAAUGCAAGCAA-------------- ..((((((.((.....((((..(((((((....(....)...........((......(((.....)))..))..)))))))...))))...)).)))))).....-------------- ( -29.10) >DroSim_CAF1 28569 105 - 1 ACUGCAUUAGACAUGAGGUACUGGCAGCCAA-AGGAAGCAGAAAGGUUAAGCAAUUAGGGCUAAAAGCCAGGCAGGGUUGUCUUUUACCAAAUCAAAUGCAAGCAU-------------- ..((((((.((.....((((..(((((((..-....(((......)))..((......(((.....)))..))..)))))))...))))...)).)))))).....-------------- ( -27.00) >DroEre_CAF1 26903 105 - 1 ACUGCAUUAGACAUGAGGUAUUGGCAGCCAA-AGGAAGCAGAAAGGUUAAGCAAUUAGGGCUAAGAGCCAGGCUGGGUUGUCUUUUACUAAAUCAAAUGCAAGCAA-------------- ..((((((.((.....((((..(((((((..-....(((.......((((....))))(((.....)))..))).)))))))...))))...)).)))))).....-------------- ( -27.30) >DroYak_CAF1 69193 104 - 1 ACUGCAUUAGACAUGAGGUAUUGGCUGCCAA-AGGCA-CAGAAAGGUUAAGCAAUUAGGGCUAAGAGCCAGGCUGGGUUGUCUUCUACCAAAUCAAAUGCAAGCAA-------------- ..((((((.((.....((((..(((.(((..-.(((.-........((((....))))(((.....)))..))).))).)))...))))...)).)))))).....-------------- ( -26.70) >DroPer_CAF1 28909 105 - 1 ACUGCAUUAGACAUGAGA-------GGACAC-GGGAAACAGU-GGCUGGAGCAAUUAGGGAAUCG------AAUAGAAUGUCAUUUAACACCUUAAAUGUAUGCUGGAGAAUGCCUCAAU ................((-------((.(((-.(....).))-).(..(.(((.((((((..((.------....)).(((......))))))))).)))...)..)......))))... ( -22.20) >consensus ACUGCAUUAGACAUGAGGUACUGGCAGCCAA_AGGAAACAGAAAGGUUAAGCAAUUAGGGCUAAAAGCCAGGCAGGGUUGUCUUUUACCAAAUCAAAUGCAAGCAA______________ ..((((((.((.....((((..(((((((....(....)...................(((.....)))......)))))))...))))...)).))))))................... (-17.92 = -19.40 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:44 2006