Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,819,909 – 15,820,011 |
Length | 102 |
Max. P | 0.641144 |
Location | 15,819,909 – 15,820,011 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 87.52 |
Mean single sequence MFE | -27.82 |
Consensus MFE | -18.04 |
Energy contribution | -19.88 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.04 |
Mean z-score | -2.41 |
Structure conservation index | 0.65 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.641144 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15819909 102 + 23771897 UUAAUUUACAUGCUAAUGGUGGAGAACAUUUUCCCAGCCACCUUGUUGUUGUCGACGGGUUUUCCACCUUUUCCGCCUGGCUUUUC---ACUGGCCAGGCUGCAA ..........(((....((((((((((...((..((((.((...)).))))..))...))))))))))......((((((((....---...)))))))).))). ( -37.70) >DroSec_CAF1 27331 99 + 1 UUAAUUUACAUGCUAAUGGUGGAGAACAUUUUCCCAGCCACCUUGUUGUUGUCGACGGGUUUUCCGCCUUUUC---CUGGCUUUUC---ACUGGCCCGGUUGCAA ..........(((....((((((((((...((..((((.((...)).))))..))...))))))))))....(---(.((((....---...)))).))..))). ( -28.50) >DroSim_CAF1 27918 99 + 1 UUAAUUUACAUGCUAAUGGUGGAGAACAUUUUCCCAGCCACCUUGUUGUUGUCGACGGGUUUUCCGCCUUUUC---CUGGCUUUUC---ACUGGCCCGGUUGCAA ..........(((....((((((((((...((..((((.((...)).))))..))...))))))))))....(---(.((((....---...)))).))..))). ( -28.50) >DroEre_CAF1 26241 81 + 1 UUAAUUUACAUGCUAAUGGUGGCGAACAUUUUCCCAGCCACCUUGU---UGUCGACG-GUUUUCCGCCUU-UC---CCGGCUUUUC----------------CAA ....((.(((.((....((((((.............))))))..))---))).)).(-(....))(((..-..---..))).....----------------... ( -17.02) >DroYak_CAF1 68502 98 + 1 UUAAUUUACAUGCUAAUGGUGGAGAACAUUUUCCCAGCCACCUUGU---UGUCGACG-GUUUUCCGCCUUUUC---CCGGCUUUUCACCACUGGCCAGGCUGCAA ..........(((....((((((((((...((..((((......))---))..))..-))))))))))....(---(.((((..........)))).))..))). ( -27.40) >consensus UUAAUUUACAUGCUAAUGGUGGAGAACAUUUUCCCAGCCACCUUGUUGUUGUCGACGGGUUUUCCGCCUUUUC___CUGGCUUUUC___ACUGGCCAGGCUGCAA ..........(((....((((((((((...((..((((.((...)).))))..))...))))))))))..........((((..........)))).....))). (-18.04 = -19.88 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:43 2006