Locus 5875

Sequence ID 3L_DroMel_CAF1
Location 15,818,710 – 15,818,823
Length 113
Max. P 0.867450
window9365

overview

Window 5

Location 15,818,710 – 15,818,823
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 81.42
Mean single sequence MFE -32.68
Consensus MFE -18.28
Energy contribution -18.84
Covariance contribution 0.56
Combinations/Pair 1.24
Mean z-score -2.36
Structure conservation index 0.56
SVM decision value 0.85
SVM RNA-class probability 0.867450
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15818710 113 - 23771897
GCAGUACGUGCCACUG-UAGUUGCAAUAAAUUGUAGCAUACUUG------UGAGCGGACGCAGUUAAUUUCUUAGCCUGCCACCUACGACCCAUUGGACAAUUUAUAUACCGCUCGCAAA
(((((.......))))-).(((((((....)))))))....(((------(((((((..((((((((....)))).))))..((...........))............)))))))))). ( -32.80)
>DroPse_CAF1 25369 114 - 1
G----ACGUGCUCCUCUUAGGUGCAAUAAAUUGCAGCAUACUCGCACUUUCAAGCGGACGCAGUUAAUUUCUCGUCCUGCAACCUACGACCGAAAGGACUAUUUAU--AAUGUCCACGAU
.----.((((....((.(((((((((....)))).(((.....((........))(((((.((.......)))))))))).))))).))((....)).........--......)))).. ( -30.30)
>DroSec_CAF1 26144 113 - 1
GCAGUACGUGCCACUG-UAGCUGCAAUAAAUUGUAGCAUACUUG------UGAGCGGACGCAGUUAAUUUCUUGGCCUGCCACCUACGACCCAUUGGACAAUUUAUAUACCGCUCGCAAA
(((((.......))))-).(((((((....)))))))....(((------(((((((..((((((((....)))).))))..((...........))............)))))))))). ( -34.80)
>DroSim_CAF1 26725 113 - 1
GCAGUACGUGCCACUG-UAGCUGCAAUAAAUUGUAGCAUACUUG------UGAGCGGACGCAGUUAAUUUCUUAGCCUGCCACCUACGACCCAUUGGACAAUUUAUAUACCGCUCGCAAA
(((((.......))))-).(((((((....)))))))....(((------(((((((..((((((((....)))).))))..((...........))............)))))))))). ( -35.20)
>DroPer_CAF1 27207 114 - 1
G----ACGUGCUCCUCUUAGGUGCAAUAAAUUGCAGCAUACUCGCACUUUCAAGCGGACGCAGUUAAUUUCUCGUCCUGCAACCUACGACCGAAAGGACUAUUUAU--AAUGUCCACGAU
.----.((((....((.(((((((((....)))).(((.....((........))(((((.((.......)))))))))).))))).))((....)).........--......)))).. ( -30.30)
>consensus
GCAGUACGUGCCACUG_UAGCUGCAAUAAAUUGUAGCAUACUUG______UGAGCGGACGCAGUUAAUUUCUUGGCCUGCCACCUACGACCCAUUGGACAAUUUAUAUACCGCUCGCAAA
.......((..........(((((((....)))))))..............((((((..((((.............)))).........((....))............))))))))... (-18.28 = -18.84 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:38 2006