Locus 5874

Sequence ID 3L_DroMel_CAF1
Location 15,817,697 – 15,817,787
Length 90
Max. P 0.982293
window9364

overview

Window 4

Location 15,817,697 – 15,817,787
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -13.20
Consensus MFE -13.20
Energy contribution -13.20
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.88
Structure conservation index 1.00
SVM decision value 1.91
SVM RNA-class probability 0.982293
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15817697 90 - 23771897
UUUUUCAUAUAUUUUUAACAUACUUAUACGCUUUUUGCUGGGUUUUUGCAAAAACGAAAUGCAAACAACCAAAAUAUAACCAAACUGCAA
.......((((((((..............((.....))..((((((((((.........)))))).))))))))))))............ ( -13.20)
>DroSec_CAF1 25155 90 - 1
UUUUUCAUAUAUUUUUAACAUACUUAUACGCUUUUUGCUGGGUUUUUGCAAAAACGAAAUGCAAACAACCAAAAUAUAACCAAACUGCAA
.......((((((((..............((.....))..((((((((((.........)))))).))))))))))))............ ( -13.20)
>DroSim_CAF1 25714 90 - 1
UUUUUCAUAUAUUUUUAACAUACUUAUACGCUUUUUGCUGGGUUUUUGCAAAAACGAAAUGCAAACAACCAAAAUAUAACCAAACUGCAA
.......((((((((..............((.....))..((((((((((.........)))))).))))))))))))............ ( -13.20)
>DroEre_CAF1 24174 90 - 1
UUUUUCAUAUAUUUUUAACAUACUUAUACGCUUUUUGCUGGGUUUUUGCAAAAACGAAAUGCAAACAACCAAAAUAUAACCAAACUGCAA
.......((((((((..............((.....))..((((((((((.........)))))).))))))))))))............ ( -13.20)
>DroYak_CAF1 66379 90 - 1
UUUUUCAUAUAUUUUUAACAUACUUAUACGCUUUUUGCUGGGUUUUUGCAAAAACGAAAUGCAAACAACCAAAAUAUAACCAAACUGCAA
.......((((((((..............((.....))..((((((((((.........)))))).))))))))))))............ ( -13.20)
>consensus
UUUUUCAUAUAUUUUUAACAUACUUAUACGCUUUUUGCUGGGUUUUUGCAAAAACGAAAUGCAAACAACCAAAAUAUAACCAAACUGCAA
.......((((((((..............((.....))..((((((((((.........)))))).))))))))))))............ (-13.20 = -13.20 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:37 2006