Locus 5873

Sequence ID 3L_DroMel_CAF1
Location 15,817,361 – 15,817,476
Length 115
Max. P 0.840371
window9363

overview

Window 3

Location 15,817,361 – 15,817,476
Length 115
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 78.03
Mean single sequence MFE -37.28
Consensus MFE -29.25
Energy contribution -29.42
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.31
Structure conservation index 0.78
SVM decision value 0.75
SVM RNA-class probability 0.840371
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15817361 115 + 23771897
AUUCAGUUAUAUAAAUGUAUAA-GUAUA----UAUUCUCACCUCCGUGGCACAUCCAUUAUUUGCCGAAUGGGUGCACGGACUGUUGCUGCCGCCGCAGGUGGUGCAUGCCACAAUUUCG
....(.((((((....))))))-.)...----.............((((((.(((((((........)))))))((((.(.((((.((....)).)))).).)))).))))))....... ( -32.50)
>DroPse_CAF1 23629 105 + 1
---------------CUAUGGGGGGCUGGACCAUCUCUCACCUCUGUGGCACAUCCAUUGUUUGCCGAAUGGGUGCACGGACUGUUGCUGCCGCCGCAGGUGGUGCAGGCCACAAUCUCA
---------------...((..((.(((.(((((........((((((...((((((((........))))))))))))))((((.((....)).))))))))).))).)).))...... ( -38.50)
>DroSec_CAF1 24827 115 + 1
AUUCAGUUAUAUAAAUGUAUAA-GUAUA----UAUUCUCACCUCCGUGGCACAUCCAUUAUUCGCCGAAUGGGUGCACGGACUGUUGCUGCCGCCGCAGGUGGUGCAUGCCACAAUUUCG
....(.((((((....))))))-.)...----.............((((((.(((((((........)))))))((((.(.((((.((....)).)))).).)))).))))))....... ( -32.50)
>DroEre_CAF1 23860 100 + 1
---------------UUAUUUG-GCAUG----UACUCUCACCUCUGUGGCACAGCCAUUAUUCGCCGAAUGGGUGCACGGACUGUUGCUGCCGCCGCAGGUGGUGCAUGCCACGAUUUCG
---------------.....((-(((((----(((...((((((.((((((((((..((...((((.....))))....))..)))).)))))).).)))))))))))))))........ ( -41.40)
>DroYak_CAF1 66049 115 + 1
AUUUCGUUUUGUAGGUAUUUUG-GUAUA----UAUGCUCACCUCCGUGGCACAUCCAUUGUUCGCCGAAUGGGUGCACGGACUGUUGCUGCCGCCGCAGGUGGUGCAUGCCACGAUUUCG
.............((.(((.((-((...----.(((((((((((((((...((((((((........)))))))))))))).(((.((....)).)))))))).)))))))).))).)). ( -36.40)
>DroPer_CAF1 25484 105 + 1
---------------CUAUGGGGGGGUGGACCAUCUCUCACCUCUGUGGCACAUCCAUUGUUUGCAGAAUGGGUGCACGGACUGUUGCUGCCGCCGCAGGUGGUGCAGGCCACAAUCUCA
---------------...(((((..((((.((......((((((((((((.((((((((........))))))))...((.(.......))))))))))).))))..))))))..))))) ( -42.40)
>consensus
_______________UUAUUAG_GUAUA____UACUCUCACCUCCGUGGCACAUCCAUUAUUCGCCGAAUGGGUGCACGGACUGUUGCUGCCGCCGCAGGUGGUGCAUGCCACAAUUUCG
.............................................(((((..(((((((........)))))))((((.(.((((.((....)).)))).).))))..)))))....... (-29.25 = -29.42 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:36 2006