| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,815,203 – 15,815,309 |
| Length | 106 |
| Max. P | 0.807832 |
| Location | 15,815,203 – 15,815,309 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 93.40 |
| Mean single sequence MFE | -18.56 |
| Consensus MFE | -16.88 |
| Energy contribution | -17.28 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.807832 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15815203 106 - 23771897 AUACAUUUAUGAAUUUAGAGAUUUGUAGAUUUUUGGGAAAUUUUCUUUUCGCCAUUUUGCAAGCUCUUCGCAGUUAAUUCUCAUUUAGCAAAAAAAAAAUAUAUUU---- .........((.....((((.((((((((....(((((((......)))).))).))))))))))))...))(((((.......))))).................---- ( -18.70) >DroSec_CAF1 22557 104 - 1 AUACAUUUAUGAAUUUAGAGAUUUGUAGAUUUUUGGGAAAUUUUCUUUUCGCCAUUUUGCAAGCUCUUCGCAGUUAAUUCUCAUUUAGCAAAAAAAA--UAUAUAU---- .......((((.((((((((.((((((((....(((((((......)))).))).)))))))))))).....(((((.......))))).....)))--).)))).---- ( -18.80) >DroSim_CAF1 23044 103 - 1 AUACAUUUAUGAAUUUAGAGAUUUGUAGAUUUUUGGGAAAUUUUCUUUUCGCCAUUUUGCAAGCUCUUCGCAGUUAAUUCUCAUUUAGCAAAAAAAA---AUAUAU---- .........((.....((((.((((((((....(((((((......)))).))).))))))))))))...))(((((.......)))))........---......---- ( -18.70) >DroEre_CAF1 21936 101 - 1 AUACAUUUAUGACUUUAGAGAUUUGUAGAUUUUUGGGA-AUUUUCUUUUCGCCAUUUUGCAAGCUCUUCGCAGUUAAUUCUGAUUUAGCAAAAAA----UAUAUAU---- .........(((((..((((.((((((((....(((((-(.......))).))).))))))))))))....)))))...................----.......---- ( -17.90) >DroYak_CAF1 63783 105 - 1 AUACAUUUUUGAAUUUAGAGAUUUGUAGAUUUUUGGGA-AUUUUCUUUUCGCCAUUUUGCAAGCUCUUCGAAGUUAAUUCUCAUUUAGCAAAAAA----UAUAUACUUAA .......(((((....((((.((((((((....(((((-(.......))).))).)))))))))))))))))(((((.......)))))......----........... ( -18.70) >consensus AUACAUUUAUGAAUUUAGAGAUUUGUAGAUUUUUGGGAAAUUUUCUUUUCGCCAUUUUGCAAGCUCUUCGCAGUUAAUUCUCAUUUAGCAAAAAAAA__UAUAUAU____ ................((((.((((((((....(((((((......)))).))).)))))))))))).....(((((.......)))))..................... (-16.88 = -17.28 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:35 2006