| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,814,745 – 15,814,835 |
| Length | 90 |
| Max. P | 0.574474 |
| Location | 15,814,745 – 15,814,835 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 96.00 |
| Mean single sequence MFE | -11.64 |
| Consensus MFE | -10.72 |
| Energy contribution | -10.92 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.574474 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15814745 90 + 23771897 CCUGAAACCAUCUACGCAAUCAAUAAGUUUUUAAUUCUCUCAAAGAAGGCACCUUCACUCAAAUCGAUUGCUAACUAACAUUUAACGGAG ...............((((((....((.........))......((((....)))).........))))))................... ( -10.50) >DroSec_CAF1 22100 90 + 1 CCUGAAACCAUCGAAGCAAUCAAUAAGUUUUUAAUUCUCUCAAAGAAGGCACCUUCACUCAAAUCGAUUGCUAACUAACAUUUAACGAAG ..............(((((((....((.........))......((((....)))).........))))))).................. ( -11.60) >DroSim_CAF1 22587 90 + 1 CCUGAAACCAUCGAAGCAAUCAAUAAGUUUUUAAUUUUCUCAAAGAAGGCACCUUCACUCAAAUCGAUUGCUAACUAACAUUUAACGGAG (((((.....))).(((((((...((((.....)))).......((((....)))).........)))))))..............)).. ( -12.10) >DroEre_CAF1 21488 87 + 1 CCUGAAACCAUCUAAGCAAUCAAUAAGUU-UUAAUUCUCUCAAAGAAGGCACCUUCA--CAAAUCGAUUGCUAACUAACAUUUAACAGAG ..............(((((((....((..-......))......((((....)))).--......))))))).................. ( -12.40) >DroYak_CAF1 63331 90 + 1 CCUGAAACCAUCUAAGCAAUCAAUAAGUUUUUAAUUCUCUCAAAGAAGGCACCUUCACUCAAAUCGAUUGCUAACUAACAUUUAACAGAG ..............(((((((....((.........))......((((....)))).........))))))).................. ( -11.60) >consensus CCUGAAACCAUCUAAGCAAUCAAUAAGUUUUUAAUUCUCUCAAAGAAGGCACCUUCACUCAAAUCGAUUGCUAACUAACAUUUAACGGAG ..............(((((((..(((....)))...........((((....)))).........))))))).................. (-10.72 = -10.92 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:34 2006