Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,813,502 – 15,813,612 |
Length | 110 |
Max. P | 0.694306 |
Location | 15,813,502 – 15,813,612 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.95 |
Mean single sequence MFE | -23.62 |
Consensus MFE | -11.96 |
Energy contribution | -12.40 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -2.46 |
Structure conservation index | 0.51 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.694306 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15813502 110 - 23771897 AUGAUUCAUCAAUC-------AAAUUUCAUCUAUAAUCGUAGCAAAAUGAUUUUAGAUUGCCAUCUCUACCUUUUUAUGGAGUGGAUAU---AUCUUAAACAACAACAAGGCAUAAAUAU .(((((....))))-------)......(((((.((((((......)))))).)))))((((...(((((((......)).)))))((.---....))...........))))....... ( -17.90) >DroSec_CAF1 20864 110 - 1 AUGAUUCAUCAACC-------AGGUUCCAUCUAUAAUCGUAGAAAUAUGAUUUUAGAUUGCCAUCUCUUCCACCUUAUAGAGUGGAUAU---AUCUCAAACAAAAACAAGGCAUAAAUAU ............((-------.(((...(((((.(((((((....))))))).))))).)))......((((((.....).)))))...---.................))......... ( -23.10) >DroSim_CAF1 21395 110 - 1 AUGAUUCAUCAACC-------AAGUUCCAUCUAUAAUCGUAGAAAUAUGAUUUUAGAUUGGCAUCUCUUCCACCUUAUAGAGUGGAUAU---AUCUCAAACAACAACAAGGCAUAAAUAU ............((-------.....(((((((.(((((((....))))))).)))).))).......((((((.....).)))))...---.................))......... ( -20.90) >DroEre_CAF1 20265 116 - 1 GUGAUUCAUCAACCAUUCGCCAAGUGGCAUCUAUAAUCGUACAAAAAUGAUUCUAGAUUGCCACAUCUUCCC-CCCGUAGAGUGGAUGU---AUCUCAAACAACAACAGGGCAUAGAUAU ((((............))))...((((((((((.((((((......)))))).)))).))))))((((...(-((.((....((..((.---....))..))...)).)))...)))).. ( -29.70) >DroYak_CAF1 59341 119 - 1 AUGAUUCAUCAACCAUUCGCCAAGUGCCAUCUAUAAUCGUACAAAAAUGAUUUUAGAUUGCCAUCUCUUCCUCCUCAUAGAGUGGAUGUUGUUUCAGAUACAACAACAGGGCAUA-AUAU .......................((((((((((.((((((......)))))).)))))..(((.((((..........))))))).(((((((........))))))).))))).-.... ( -26.50) >consensus AUGAUUCAUCAACC_______AAGUUCCAUCUAUAAUCGUAGAAAAAUGAUUUUAGAUUGCCAUCUCUUCCACCUUAUAGAGUGGAUAU___AUCUCAAACAACAACAAGGCAUAAAUAU ............................(((((.((((((......)))))).)))))((((..((((..........))))..(((.....)))..............))))....... (-11.96 = -12.40 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:33 2006