Locus 587

Sequence ID 3L_DroMel_CAF1
Location 1,694,679 – 1,694,789
Length 110
Max. P 0.596706
window896

overview

Window 6

Location 1,694,679 – 1,694,789
Length 110
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 88.07
Mean single sequence MFE -38.76
Consensus MFE -30.11
Energy contribution -30.83
Covariance contribution 0.72
Combinations/Pair 1.09
Mean z-score -1.54
Structure conservation index 0.78
SVM decision value 0.13
SVM RNA-class probability 0.596706
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1694679 110 + 23771897
GGCGGGUCUUGGAUCUUGCCUCUUGGCUUUUAGUCGAGGGCUCAGGGCCUUGUCCUUUCUGCGCUUCAUCAGGGCUGAUAGUUAUGAUCUGGAGUACCCUGCCAUAGAGU
(((((((((..((((..(((.((((((.....)))))))))....(((((((.................))))))).........))))..).).)))).)))....... ( -39.63)
>DroSec_CAF1 56723 108 + 1
GGCGGGUCUUGGAUCUUGCCUCUUGGCUUUUAGUCGAGGGCUCAGGGCCUUGUCCUUUCUGCGCUUCAUCAGGGCU--UAGUUAUGAUCUGCAGUACCCUGCAAACCCGU
.((((((...(((((..(((.((((((.....)))))))))...((((((((.................)))))))--)......)))))((((....))))..)))))) ( -39.93)
>DroSim_CAF1 54638 108 + 1
GGCGGGUCUUGGAUCUUGCCUCUUGGCUUUAAGUCGAGGGCUCAGGGCCUUGUCCUUUCUGCGCUUCAUCAGGGCU--UAGUUAUGAUCUGCAGUACCCUGCCAGCCCGU
(((((((((((((((..(((.((((((.....)))))))))...((((((((.................)))))))--)......)))))).)).)))).)))....... ( -39.63)
>DroEre_CAF1 60074 100 + 1
-GCGGGUCUGGGAUCUUGGCUCUUGGCUC-------AGAGCUCUGGGCCUUGUCCUUUCUGCUCUUCAUCAGGGCU--UAGUUAUGAUCUGGAGUACCCUGCCAGCCAGG
-((.(((..(((.....((..(..(((((-------((....)))))))..).))....((((((..((((..((.--..))..))))..))))))))).))).)).... ( -35.90)
>DroYak_CAF1 57918 101 + 1
GGCGGGUCUUGGAUCUUGGCUCUUGGCUU-------AGGGCUCAGGGCCUUGUCCUUUCUGCGCUUCAUCAGGGCU--UAGUUAUGAUCCGGAGUACCCUGCCAGCCGCG
(((((((((((((((..((((((.(((..-------...))).))))))..(((((...((.....))..))))).--.......))))).))).)))).)))....... ( -38.70)
>consensus
GGCGGGUCUUGGAUCUUGCCUCUUGGCUUU_AGUCGAGGGCUCAGGGCCUUGUCCUUUCUGCGCUUCAUCAGGGCU__UAGUUAUGAUCUGGAGUACCCUGCCAGCCAGU
(((((((((((((((.(..(((((((((((......))))).))))((((((.................))))))....))..).)))))).)).)))).)))....... (-30.11 = -30.83 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:59 2006