Locus 5869

Sequence ID 3L_DroMel_CAF1
Location 15,811,670 – 15,811,781
Length 111
Max. P 0.599357
window9359

overview

Window 9

Location 15,811,670 – 15,811,781
Length 111
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 83.96
Mean single sequence MFE -36.48
Consensus MFE -29.15
Energy contribution -29.46
Covariance contribution 0.31
Combinations/Pair 1.08
Mean z-score -1.52
Structure conservation index 0.80
SVM decision value 0.13
SVM RNA-class probability 0.599357
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15811670 111 + 23771897
AUUCGGAGUGUUAGUUGGACUUGCAUGCAAUUGCCUGGCGCCACGUGUCAGCGGGGCAUGGGGGCGCCCAAAAAAAGGGGGGGGGGGUAUUUGCGUGGGGGAAGAGAAG-AG
...................(((.(((((((.(((((.(((((.((((((.....))))))..)))))((........)).....))))).))))))).)))........-.. ( -38.50)
>DroSim_CAF1 19581 105 + 1
AUUCGGAGUGUUAGUUAGUCCUGCAUGCAAUUGCCUGGCGCCACGUGUCAGCGGGGCAUGG-GGCGCCCAAAAA------GGGGGGUUAUUUGUGUGGGGGGUGAGGGGGUG
..............(((.((((.(((((((..((((((((((.((((((.....)))))).-))))))......------...))))...))))))).)))))))....... ( -37.40)
>DroEre_CAF1 18477 91 + 1
AUUCGGAGUGUUAGUUAGUCCUGCAUGCAAUUGCCUGGCGCCACGUGUCAGCGGGGCAUGG-GGCACCCAAA--------GGGGGGUUAUUUGUGUGG-GG-----------
....(((.((.....)).)))..(((((((..((((...(((.((((((.....)))))).-))).(((...--------)))))))...))))))).-..----------- ( -31.60)
>DroYak_CAF1 57480 92 + 1
AUUCGGAGUGUUAGUUAGUCCUGCAUGCAAUUGCCUGGCGCCACGUGUCAGCGGGGCAUGG-GGCGCCCAAA--------AGGGGGUUAUUUGCGUGGGGG-----------
...................(((.(((((((..((((((((((.((((((.....)))))).-))))))....--------...))))...))))))).)))----------- ( -38.41)
>consensus
AUUCGGAGUGUUAGUUAGUCCUGCAUGCAAUUGCCUGGCGCCACGUGUCAGCGGGGCAUGG_GGCGCCCAAA________GGGGGGUUAUUUGCGUGGGGG___________
...................(((.(((((((..((((((((((..(((((.....)))))...))))))...............))))...))))))).)))........... (-29.15 = -29.46 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:32 2006