Locus 5867

Sequence ID 3L_DroMel_CAF1
Location 15,811,067 – 15,811,168
Length 101
Max. P 0.733914
window9355

overview

Window 5

Location 15,811,067 – 15,811,168
Length 101
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.78
Mean single sequence MFE -35.92
Consensus MFE -23.86
Energy contribution -25.28
Covariance contribution 1.42
Combinations/Pair 1.28
Mean z-score -1.98
Structure conservation index 0.66
SVM decision value 0.43
SVM RNA-class probability 0.733914
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15811067 101 - 23771897
CUGAGCAUUACGAAGCAAAGUUGUAGUGACUUGCAAGGUGGGGCAAUUUGUCAUAUUACACA--GAUAAGUUGGCACCUGCCAUC-AACUUCGCUAGAGGUGGU----------------
..(((((((((((.......)))))))).)))....((..((((((((((((..........--)))))))).)).))..))(((-(.((((....))))))))---------------- ( -30.70)
>DroPse_CAF1 17254 120 - 1
UGGAGCAUUACGAAUCACACCUGUAAUGACUGGCAGCGAAGGGGAAUUUCUCAUAUUACACAGAGAUAAGCAGGUGCCAGCCAUCCAACUUGGGUAGAGGGGGAGUCACUUCUCCCCAAA
((((.(((((((.........))))))).((((((.(......(....((((..........))))....).).))))))...))))..(((((.(((((........))))).))))). ( -34.50)
>DroSec_CAF1 18584 114 - 1
CUGAGCAUUACGGAGCAAAGUUGUAAUGACUUGCAAGGUGGGGCAAUUUGUCAUAUUACACA--GAUAAGUUGGCACCUGCCAUC-AAAUUCGCUGGAGGUGGUUCCACACUUUCUC---
...(((........((((.(((.....)))))))..((..((((((((((((..........--)))))))).)).))..))...-......)))(((((((......)))))))..--- ( -34.40)
>DroSim_CAF1 19006 114 - 1
CUGAGCAUUACGGAGCAAAGUUGUAAUGACUUGCAAGGUGGGGCAAUUUGUCAUAUUACACA--GAUAAGUUGGCACCUGCCAUC-AACUUCGCUGGAGGUGGUUCCACACUUUCUC---
...(((........((((.(((.....)))))))..((..((((((((((((..........--)))))))).)).))..))...-......)))(((((((......)))))))..--- ( -34.40)
>DroEre_CAF1 17915 114 - 1
UUGAGCAUUACAGAGCAAAGUUGUGGUGACUUGCAAGGUGGGGCAAUUUGUCAUAUUACACA--GAUAAGUUGGCACCUGCCAUC-AACUUUGCAGGAGGUGGUUCCACACCUUCUC---
..............(((((((((.(....)......((..((((((((((((..........--)))))))).)).))..))..)-))))))))((((((((......)))))))).--- ( -42.80)
>DroYak_CAF1 56885 114 - 1
UUGAGCAUUACACAGCGAAGUUGUAAUGACUUGCAAGGUGGGGCCAUUUGUCAUAUUACACA--GAUAAGUUGGCACCUGCCAUC-AGCUUUGCAGGAGGUGGUUCCGCACUUUCUC---
..............((((((((((((....))))..((..((((((((((((..........--)))))).)))).))..))...-))))))))((((((((......)))))))).--- ( -38.70)
>consensus
CUGAGCAUUACGGAGCAAAGUUGUAAUGACUUGCAAGGUGGGGCAAUUUGUCAUAUUACACA__GAUAAGUUGGCACCUGCCAUC_AACUUCGCUGGAGGUGGUUCCACACUUUCUC___
..(((((((((((.......)))))))).)))....((..((((((((((((............)))))))).)).))..)).............(((((((......)))))))..... (-23.86 = -25.28 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:29 2006