Locus 5866

Sequence ID 3L_DroMel_CAF1
Location 15,810,565 – 15,810,659
Length 94
Max. P 0.575128
window9354

overview

Window 4

Location 15,810,565 – 15,810,659
Length 94
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 85.91
Mean single sequence MFE -17.02
Consensus MFE -13.56
Energy contribution -13.76
Covariance contribution 0.20
Combinations/Pair 1.11
Mean z-score -1.53
Structure conservation index 0.80
SVM decision value 0.08
SVM RNA-class probability 0.575128
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15810565 94 - 23771897
ACUUAU--------CGAACUAUUUCCACAAGCGUGGCUUUUACUUUCUCAUUCAUAGAGAUACAAAAGCCAGUCGCUAGAACCAUUAGCACUACUUCUUAGA
......--------....(((........((((((((((((....((((.......))))...))))))))..))))........))).............. ( -17.89)
>DroSec_CAF1 18128 94 - 1
ACUUAU--------CGAACUUUAUCCACAAGCGUGGCUUUUACUUUCUCAUUCAUAAAGAUACAAAAGCCAGCGGCUAGAACCAUUAGCGCUACUUCUUAGA
......--------...............((((((((((((....(((.........)))...)))))))...((......))....))))).......... ( -15.90)
>DroSim_CAF1 18445 94 - 1
ACUUAU--------CGAACUUUUUCCACAAGCGUGGCUUUUACUUUCUCAUUCAUAAAGAUACAAAAGCCAGCGGCUAGAACCAUUAGCACUACUUCUUAGA
......--------.(((............((.((((((((....(((.........)))...)))))))))).(((((.....))))).....)))..... ( -15.70)
>DroEre_CAF1 17231 102 - 1
ACUUAUUGAACUAUUGAACUAUUUCCGCAAAUGCGGCUUUUACUUUCUCAUUCAUAGAGAUACAAAAGCCAGCCGCUGGAACCAUUAGCACUACUUCUAAGA
.((((..(((.((.((......((((((....(((((((((....((((.......))))...))))))).)).)).)))).......)).)).))))))). ( -20.92)
>DroYak_CAF1 56333 94 - 1
ACCCAC--------CGAACUAUUUACUCAAAUGCGGCUUUUACUUUCUCAUUCAUGGAUAUACAAAAGCCAGCCGCUGAACACAUUAGCACUACUUCUUAGA
......--------....(((...........(((((((((...(((........))).....))))))).)).(((((.....))))).........))). ( -14.70)
>consensus
ACUUAU________CGAACUAUUUCCACAAGCGUGGCUUUUACUUUCUCAUUCAUAGAGAUACAAAAGCCAGCCGCUAGAACCAUUAGCACUACUUCUUAGA
...............(((................(((((((....((((.......))))...)))))))....(((((.....))))).....)))..... (-13.56 = -13.76 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:28 2006