Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,809,520 – 15,809,622 |
Length | 102 |
Max. P | 0.692062 |
Location | 15,809,520 – 15,809,622 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 92.71 |
Mean single sequence MFE | -21.46 |
Consensus MFE | -15.82 |
Energy contribution | -16.02 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.12 |
Structure conservation index | 0.74 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692062 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15809520 102 + 23771897 GCCACCACCGAAACUGAGUAAA-----AAAAUAUAAUACGCUAUAUA----CGUCGGAGUGUUCCUACCAAUUUCCACUAGCCCUAGCCUUCUAGAACUACUCUCUUUCGG .......((((((..(((((..-----............((((....----.((.((((.............)))))))))).((((....))))...)))))..)))))) ( -19.62) >DroSec_CAF1 17116 102 + 1 GCCACCACCGAAACUGAGUAAA-----AAAAUAUACCACGAUAUAUA----CGUCGGUGUGUUCCUACCAAUUUCCACUAGCCCUAGCCUUCUAGAACUACUCUCUUUCGG .......((((((..(((((..-----..(((((((((((.......----))).))))))))....................((((....))))...)))))..)))))) ( -24.30) >DroSim_CAF1 17437 102 + 1 GCCACCACCGAAACUGAGUAAA-----AAAAUAUACCACGAUAUAUA----CGUCGGCGUGUUCCUACCAAUUUCCACUAGCCCUAGCCUUCUAGAACUACUCUCUUUCGG .......((((((..(((((..-----..((((..(((((.......----))).))..))))....................((((....))))...)))))..)))))) ( -20.20) >DroEre_CAF1 16299 105 + 1 GCCACCACCGAAACUGAGUAA------AAAAUAUAAUGCGAUAUAUACAGACGUCGGAGUGUUGCUACCAAUUUCCACUAGCCCUAGCCUUCUAGAACUACUCUCUUUCGG .......((((((..(((((.------..........(((((..........)))((((.((((....))))))))....)).((((....))))...)))))..)))))) ( -20.70) >DroYak_CAF1 55361 107 + 1 GCCACCACCGAAACUGAGUAAAACUAAAAAAUAUAAUGCGAUAUAUA----CGUCGCAGUGUUCCUACCAAUUUCCACUAGCCCUAGCCUUCUAGAACUACUCUCUUUCGG .......((((((..(((((.........(((((..((((((.....----.)))))))))))....................((((....))))...)))))..)))))) ( -22.50) >consensus GCCACCACCGAAACUGAGUAAA_____AAAAUAUAAUACGAUAUAUA____CGUCGGAGUGUUCCUACCAAUUUCCACUAGCCCUAGCCUUCUAGAACUACUCUCUUUCGG .......((((((..(((((.........(((((....((((..........))))..)))))....................((((....))))...)))))..)))))) (-15.82 = -16.02 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:26 2006