Locus 5863

Sequence ID 3L_DroMel_CAF1
Location 15,809,117 – 15,809,208
Length 91
Max. P 0.998899
window9351

overview

Window 1

Location 15,809,117 – 15,809,208
Length 91
Sequences 5
Columns 91
Reading direction forward
Mean pairwise identity 99.56
Mean single sequence MFE -30.80
Consensus MFE -30.50
Energy contribution -30.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.44
Structure conservation index 0.99
SVM decision value 3.27
SVM RNA-class probability 0.998899
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15809117 91 + 23771897
AAAAGGUUUCUAGAUCUAGACAGGUGCUAAUGUUGCUGUCCCUGUCGCUAGCACUCGAUUCGAGCCUGGCACUGAAAGCCUUUCGUUCCGA
.((((((((.(((.....((((((..(..........)..))))))(((((..((((...)))).))))).))).))))))))........ ( -30.50)
>DroSec_CAF1 16719 91 + 1
AAAAGGUUUCUAGAUCUAGACAGGUGCUAAUGUUGCUGUCCCUGUCGCUAGCACUCGAUUCGAGCCUGGCACUGAAAGCCUUUCGUUCCGA
.((((((((.(((.....((((((..(..........)..))))))(((((..((((...)))).))))).))).))))))))........ ( -30.50)
>DroSim_CAF1 17046 91 + 1
AAAAGGUUUCUAGAUCUAGACAGGUGCUAAUGUUGCUGUCCCUGUCGCUAGCACUCGAUUCGAGCCUGGCACUGAAAGCCUUUCGUUCCGA
.((((((((.(((.....((((((..(..........)..))))))(((((..((((...)))).))))).))).))))))))........ ( -30.50)
>DroEre_CAF1 15896 91 + 1
AAAAGGUUUCUAGAUCUAGACAGGUGCUAGUGUUGCUGUCCCUGUCGCUAGCACUCGAUUCGAGCCUGGCACUGAAAGCCUUUCGUUCCGA
.((((((((.(((.....((((((..(.((.....)))..))))))(((((..((((...)))).))))).))).))))))))........ ( -32.00)
>DroYak_CAF1 54901 91 + 1
AAAAGGUUUCUAGAUCUAGACAGGUGCUAAUGUUGCUGUCCCUGUCGCUAGCACUCGAUUCGAGCCUGGCACUGAAAGCCUUUCGUUCCGA
.((((((((.(((.....((((((..(..........)..))))))(((((..((((...)))).))))).))).))))))))........ ( -30.50)
>consensus
AAAAGGUUUCUAGAUCUAGACAGGUGCUAAUGUUGCUGUCCCUGUCGCUAGCACUCGAUUCGAGCCUGGCACUGAAAGCCUUUCGUUCCGA
.((((((((.(((.....((((((..(..........)..))))))(((((..((((...)))).))))).))).))))))))........ (-30.50 = -30.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:25 2006