Locus 5860

Sequence ID 3L_DroMel_CAF1
Location 15,803,605 – 15,803,710
Length 105
Max. P 0.775846
window9343

overview

Window 3

Location 15,803,605 – 15,803,710
Length 105
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 79.37
Mean single sequence MFE -33.18
Consensus MFE -24.11
Energy contribution -24.13
Covariance contribution 0.02
Combinations/Pair 1.38
Mean z-score -1.67
Structure conservation index 0.73
SVM decision value 0.54
SVM RNA-class probability 0.775846
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15803605 105 + 23771897
AUUCGCUGGGAAUCGCUGUUCUAAAUGUUUCAACCGAGGCUUUGGUUAUCUCGUGACGACUUCUUCUUCGAUGACGCUGCUUGCUGACGCGAUUCUCGGCCAGUU
....((((((((((((.(((......((.(((..(((((....(((..((....))..)))....))))).))).))........)))))))))))))))..... ( -33.34)
>DroAna_CAF1 513 105 + 1
AUUCGCUGGGAAUUGCUGUUUGAAAGGAUUCAACAGAGGUCGUUGUUUUUUCUCGAUAAUUUCGUCGACGUUGGCGCUGCUUUGAGACACGUUUCUCAGCCAGUU
....((((((((.((.(((((.((((.(.(((((.(((((..(((........)))..)))))(....))))))...).)))).))))))).))))))))..... ( -29.00)
>DroYak_CAF1 510 105 + 1
AUUCGCUGGGGAUCGCUGUUCUGAAUGUUUCAACUGAGGCUUUGGUUAUCUCGUGGCAACUUCGUCUUCGAUGACGCUGCUUGGAGACGCGAUUUUCGGCCAGUU
....((((..((((((....(..((.(((((....)))))))..)...((((..((((.(.(((((...))))).).))))..)))).))))))..))))..... ( -37.20)
>consensus
AUUCGCUGGGAAUCGCUGUUCUAAAUGUUUCAACAGAGGCUUUGGUUAUCUCGUGACAACUUCGUCUUCGAUGACGCUGCUUGGAGACGCGAUUCUCGGCCAGUU
....((((((((((((..((((((..(((((....)))))....((((((....(((......)))...)))))).....))))))..))))))))))))..... (-24.11 = -24.13 +   0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:17 2006