Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,693,997 – 1,694,088 |
Length | 91 |
Max. P | 0.621142 |
Location | 1,693,997 – 1,694,088 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 82.15 |
Mean single sequence MFE | -24.29 |
Consensus MFE | -15.73 |
Energy contribution | -16.19 |
Covariance contribution | 0.46 |
Combinations/Pair | 1.18 |
Mean z-score | -1.86 |
Structure conservation index | 0.65 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.621142 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1693997 91 - 23771897 UGCGGCGGCCCUCUAAUUAAACGCAAACGGCUGCCAAAUUAGUGAAUGACCACAUUGCGCCGGAACCAGCGUCCCCAGCAACAAAGGCAAU .(((((((((..................)))))))......(((......)))...))((((....).((.......))......)))... ( -24.07) >DroSec_CAF1 56006 91 - 1 UGCGGCGGCCCUCUAAUUAAACGCAAACGGCUGCCAAAUUAGCGAAUGACCACAUUGCGCUGGAACCAGCGUCCCCGGCAACAAAGACAAU .(((((((((..................)))))))...((((((((((....)))).)))))).....))(((...(....)...)))... ( -27.17) >DroSim_CAF1 53928 91 - 1 UGCGGCGGCCCUCUAAUUAAACGCAAACGGCUGCCAAAUUAGCGAAUGACCACAUUGCGCCGGAACCAGCGUCCCCGGCAACAAAGGCAAU ((((((((((..................)))))))......((.((((....))))))(((((.((....))..))))).......))).. ( -27.77) >DroEre_CAF1 59413 72 - 1 UGCGGCGGCCCUCUAAUUAAACGCAAACGGCUGCCAAAUUAGCGAGUGACCACAUUGCGCCGGAA-------------------AAGCAAU ((((((((((..................)))))))...(..(((((((....)))).)))..)..-------------------..))).. ( -21.27) >DroYak_CAF1 57244 91 - 1 UGCGGCGGCCCUCUAAUUAAACGCAAACGGCUGCCAAAUUAGCGAAUGACCACAUUGCGCCGGAACCAGCGUCCCCAGCAACCAAAGCAAU ((((((((((..................)))))))......((.((((....))))((((.(....).)))).....)).......))).. ( -23.57) >DroAna_CAF1 54093 70 - 1 ---GGCAGACCUCUAAUUAAACGCAGACGGCUGCCAAAUUAGCUAAUGACAACAUUGUGCCGGAACCGG------------------CAAC ---(((((.(((((..........))).)))))))........(((((....)))))(((((....)))------------------)).. ( -21.90) >consensus UGCGGCGGCCCUCUAAUUAAACGCAAACGGCUGCCAAAUUAGCGAAUGACCACAUUGCGCCGGAACCAGCGUCCCC_GCAACAAAGGCAAU ((((((((((..................)))))))......(((((((....)))).)))..........................))).. (-15.73 = -16.19 + 0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:58 2006