| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,795,510 – 15,795,611 |
| Length | 101 |
| Max. P | 0.715989 |
| Location | 15,795,510 – 15,795,611 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 76.62 |
| Mean single sequence MFE | -31.93 |
| Consensus MFE | -22.31 |
| Energy contribution | -21.35 |
| Covariance contribution | -0.96 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.715989 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15795510 101 + 23771897 UGAAA------UCGCACCA----UUUUAGGUUGGCCUGGCCGUCGUCAAUGGACAGCUGUAUGCUGUGGGCGGCUUUGAUGGUUCCGCCUAUUUGAAAACCAUCGAGGUCU .....------..((.((.----..(((((....)))))((((.....))))(((((.....)))))))))(((((((((((((...(......)..))))))))))))). ( -33.80) >DroVir_CAF1 984 105 + 1 CCUAA------UUCUACCAUCUCUUGCAGGUCGGCCUAGCCGUAGUCAAUGGCCAACUGUAUGCUGUGGGCGGCUUCGAUGGCUCCGCUUAUUUGAAAACCAUUGAGGUGU .....------.....((((..(.(((((...((((..............))))..))))).)..))))...((((((((((.....(......)....)))))))))).. ( -29.74) >DroMoj_CAF1 992 105 + 1 ACUAA------UUUUUUCCUUUUAUUCAGGUCGGCCUAGCCGUUGUUAAUGGACAAUUGUAUGCUGUGGGCGGCUUUGAUGGCUCCGCCUAUUUGAAGACCAUUGAGGUCU .....------.............(((((((.(((..((((((((((....)))........((((....))))...)))))))..))).)))))))((((.....)))). ( -31.00) >DroAna_CAF1 989 105 + 1 UGUAAACUC--UUGAAUAA----UUUUAGGUUGGCCUGGCUGUGGUAAACGGACAGCUGUACGCGGUGGGCGGCUUCGAUGGCUCCGCCUAUCUGAAGACUAUAGAGGUUU ......(((--(.......----((((((((.(((..((((((.(....((..((.(((....)))))..))....).))))))..))).)))))))).....)))).... ( -29.60) >DroWil_CAF1 1166 108 + 1 UUUAACCUAUUUCGAAUGU---UUUUCAGGUCGGUCUCGCGGUUGUUAAUGGUCAGCUGUAUGCCGUUGGAGGCUUUGAUGGUUCUGCCUAUUUGAAAACCAUCGAGGUGU .......((((((((.((.---(((((((((.(((...(((((((........)))))))..(((((..((...))..)))))...))).))))))))).)))))))))). ( -32.80) >DroYak_CAF1 1071 101 + 1 UGAAA------UGGUGUCA----UUUUAGGUUGGCCUGGCCGUCGUUAAUGGACAGCUGUAUGCUGUGGGCGGCUUUGAUGGUUCCGCCUAUUUAAAAACCAUCGAGGUCU (((((------((....))----))))).....((((..((((.....))))(((((.....)))))))))(((((((((((((.............))))))))))))). ( -34.62) >consensus UGUAA______UUGUAUCA____UUUCAGGUCGGCCUGGCCGUCGUUAAUGGACAGCUGUAUGCUGUGGGCGGCUUUGAUGGCUCCGCCUAUUUGAAAACCAUCGAGGUCU .......................((((((((.(((..((((((((...((((....))))..((((....))))..))))))))..))).))))))))(((.....))).. (-22.31 = -21.35 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:13 2006