Locus 5855

Sequence ID 3L_DroMel_CAF1
Location 15,792,062 – 15,792,155
Length 93
Max. P 0.608598
window9337

overview

Window 7

Location 15,792,062 – 15,792,155
Length 93
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 87.81
Mean single sequence MFE -21.00
Consensus MFE -14.04
Energy contribution -13.60
Covariance contribution -0.44
Combinations/Pair 1.09
Mean z-score -2.56
Structure conservation index 0.67
SVM decision value 0.15
SVM RNA-class probability 0.608598
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15792062 93 - 23771897
GAUGUGAGAAAUGCAUAACAAUAUCAGUGUAUCGAUAUUUUUGAGAAUACACUUAUUUAUAUUGUGAUACUUUGGUGGACAUUUCGUUAUAUC
(((((((((((((........((((((.((((((((((...((((......))))...)))))..))))).))))))..)))))).))))))) ( -20.90)
>DroSec_CAF1 41492 82 - 1
GAUGUGAGAAAUGCAUAAU-----------AUCGAUAUUUUUGAGAAUACACUUAUUCAUAUUGUGAUACUUUGAUGGACAUUUCGUUAUAUC
(((((((((((((((((((-----------(((((.....))))(((((....))))).)))))))...((.....)).)))))).))))))) ( -17.40)
>DroSim_CAF1 47026 93 - 1
GAUGUGAGAAAUGCAUAAUAUUAUGAGUGUAUCGAUAUUUUCGAGAAUACACUUAUUUAUAAUGUGAUACUUUGAUGGACAUUUCGUUAUAUC
(((((((((((((((((.(((.(((((((((((((.....))))...)))))))))..))).))))...((.....)).)))))).))))))) ( -24.70)
>consensus
GAUGUGAGAAAUGCAUAAUA_UAU_AGUGUAUCGAUAUUUUUGAGAAUACACUUAUUUAUAUUGUGAUACUUUGAUGGACAUUUCGUUAUAUC
((((((((((((((((...............((((.....)))).....(((...........)))........)))..)))))).))))))) (-14.04 = -13.60 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:11 2006