Locus 5854

Sequence ID 3L_DroMel_CAF1
Location 15,790,046 – 15,790,138
Length 92
Max. P 0.685320
window9336

overview

Window 6

Location 15,790,046 – 15,790,138
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 86.38
Mean single sequence MFE -29.12
Consensus MFE -23.00
Energy contribution -23.44
Covariance contribution 0.44
Combinations/Pair 1.05
Mean z-score -1.65
Structure conservation index 0.79
SVM decision value 0.32
SVM RNA-class probability 0.685320
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15790046 92 + 23771897
ACACGCACACUAGAGUUGGUGUGGGUGACUACUUGUGCAAUGUGCACUGAGUGCUGCAGUACGACCCCGAUAACGUAGACUGGUGGCAUACA
.(((.(((((((....))))))).)))...((((((((.....)))).))))((..(((((((..........)))..))).)..))..... ( -28.50)
>DroSec_CAF1 39479 92 + 1
ACACGCACACUAGAGUUGGUGUGGGUGACUACUUGUGCAAUGUGCACUCAGUGCUACAGUACGAACUCGAUAACGUGGACUGGUGGCAUAAA
.(((.(((((((....))))))).))).((((..((((.....)))).((((.((((..((((....)).))..))))))))))))...... ( -30.60)
>DroSim_CAF1 44997 92 + 1
ACACGCACACUAGAGUUGGUGUGGGUGACUACUUGUGCAAUGUGCACUCAGUGCUACAGUACGUACUCGAUAGCGUGGACUGGGGGCAUACA
.(((.(((((((....))))))).))).......((((.....))))...(((((.((((((((........))))..))))..)))))... ( -31.50)
>DroEre_CAF1 39956 90 + 1
ACACGCACACUA--GUUGGUGUGGGUGACUACUUGUGCAAUGUGCACUGGAUGGUACAGUACGACUUCUAUAAGGUGGACAUAUGGCAAAUA
.(((.((((((.--...)))))).)))........(((.((((.((((..((((...((.....)).))))..)))).))))...))).... ( -28.90)
>DroYak_CAF1 3178 90 + 1
ACACGCACACUA--GUUGGUGUGGGUGACUACUUGUGCAAUGUGCACUGGUUGCUACAGUACGACUUCUAGAAGGUGGACAGCAGACAAAUA
.(((.((((((.--...)))))).))).((((((((((.....)))).(((((........)))))......)))))).............. ( -26.10)
>consensus
ACACGCACACUAGAGUUGGUGUGGGUGACUACUUGUGCAAUGUGCACUGAGUGCUACAGUACGACCUCGAUAACGUGGACUGGUGGCAUACA
.(((.(((((((....))))))).))).((((..((((.....))))...((((....))))............)))).............. (-23.00 = -23.44 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:10 2006