Locus 5853

Sequence ID 3L_DroMel_CAF1
Location 15,784,142 – 15,784,239
Length 97
Max. P 0.539340
window9335

overview

Window 5

Location 15,784,142 – 15,784,239
Length 97
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 76.99
Mean single sequence MFE -13.27
Consensus MFE -1.77
Energy contribution -1.93
Covariance contribution 0.16
Combinations/Pair 1.25
Mean z-score -1.49
Structure conservation index 0.13
SVM decision value 0.01
SVM RNA-class probability 0.539340
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15784142 97 - 23771897
AUGCAUUUUA-ACCAUUGUAUCGAACAUAGACAAACCAAAAAAAAAAAAAAACAAAUCUGUAAACACGUCCAAAACAAAAGCG--AGG----ACGUGGAUGC---AC
..........-.....((((((....(((((.........................)))))...(((((((............--.))----))))))))))---). ( -17.53)
>DroSec_CAF1 33540 88 - 1
AUGCAUUUUA-ACCAUUGUAUCGAACAUAGACUAACCAAA---------AAACAAAUCUGUAAACACGUCCAACACAAAAGCG--AGA----UCGUGGAUGC---AC
..........-.....((((((....(((((.........---------.......)))))...(((((((...........)--.))----.)))))))))---). ( -10.59)
>DroSim_CAF1 38723 88 - 1
AUGCAUUUUA-ACCAUUGUAUCGAACAUAGACAAACCAAA---------AAACAAAUCUGUAAACACGUCCAACACAAAAGCG--AGA----UCGUGGAUGC---AC
..........-.....((((((....(((((.........---------.......)))))...(((((((...........)--.))----.)))))))))---). ( -10.59)
>DroEre_CAF1 33955 87 - 1
AUGCAUUUUA-ACCAUUGUAUCGAACAUAAACAAACCAAA----------ACCAAAUCUGUAAACACGUCCAAAACCAAAUCA--AGG----ACGUGAGUGC---AC
.((((((...-....((((...........))))......----------..............(((((((............--.))----))))))))))---). ( -15.92)
>DroPer_CAF1 7967 94 - 1
AUGCAUUUUAGACCAUUUUAUCCGAAAAAG--UGAACAAA---------GAACCA--CUAUCAACACGUCCAAAACGAGAACUUAAGGUGCGUCCUAGACUCCAGAC
(((((((((((..((((((.......))))--))......---------......--.........(((.....))).....))))))))))).............. ( -11.70)
>consensus
AUGCAUUUUA_ACCAUUGUAUCGAACAUAGACAAACCAAA_________AAACAAAUCUGUAAACACGUCCAAAACAAAAGCG__AGG____UCGUGGAUGC___AC
..(((((.........(((.....))).....................................((((.........................)))))))))..... ( -1.77 =  -1.93 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:09 2006