Locus 5852

Sequence ID 3L_DroMel_CAF1
Location 15,775,046 – 15,775,136
Length 90
Max. P 0.879977
window9334

overview

Window 4

Location 15,775,046 – 15,775,136
Length 90
Sequences 4
Columns 90
Reading direction reverse
Mean pairwise identity 89.63
Mean single sequence MFE -29.12
Consensus MFE -24.35
Energy contribution -24.73
Covariance contribution 0.37
Combinations/Pair 1.00
Mean z-score -1.92
Structure conservation index 0.84
SVM decision value 0.91
SVM RNA-class probability 0.879977
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15775046 90 - 23771897
UUCAUUGGAGGCGCUUUCAUCGGAGACGCUUUCAUCGGAGGCGCUUUCAUUGGAGCCGCUUUCGUAGCCUUCAGGAUACUCGAUGAUCAA
.((((((((((((.(((((...((((((((((.....)))))).))))..))))).)))))))(((.((....)).)))..))))).... ( -31.20)
>DroSec_CAF1 24552 90 - 1
UUCAUUGGAGGCGCUUUCCUCGGAGACGCUUUCAUCGGAGGCGCUUUCAUUGGAGCCGCUUUCGUAGCCUUCAGGAUACUCGAUGAUCAA
.((((((((((((..((((...((((((((((.....)))))).))))...)))).)))))))(((.((....)).)))..))))).... ( -31.10)
>DroSim_CAF1 25687 90 - 1
UUCAUUGGAGGCGCUUUCCUCGGAGACGCUUUCAUCGGAGGCGCUUUCAUUGGAGCCGCUUUCGUAGCCUUCAGGAUACUCGAUGAUCAA
.((((((((((((..((((...((((((((((.....)))))).))))...)))).)))))))(((.((....)).)))..))))).... ( -31.10)
>DroEre_CAF1 24886 75 - 1
UUCAUUGGAGGCGCUU---------------UCAUCAGAGGCGCUUUCAUCGGAGCCGCUUUCGUAGCCUUCAGGAUAUUCGAUGAUCAA
.(((.(((((((((((---------------(.....))))))))))))(((((.(((((.....))).....))...)))))))).... ( -23.10)
>consensus
UUCAUUGGAGGCGCUUUCCUCGGAGACGCUUUCAUCGGAGGCGCUUUCAUUGGAGCCGCUUUCGUAGCCUUCAGGAUACUCGAUGAUCAA
.((.((((((((........((....)).......(((((((((((......))).))))))))..)))))))))).............. (-24.35 = -24.73 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:08 2006