Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,770,315 – 15,770,424 |
Length | 109 |
Max. P | 0.996539 |
Location | 15,770,315 – 15,770,424 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 84.30 |
Mean single sequence MFE | -34.72 |
Consensus MFE | -24.04 |
Energy contribution | -26.88 |
Covariance contribution | 2.84 |
Combinations/Pair | 1.09 |
Mean z-score | -3.86 |
Structure conservation index | 0.69 |
SVM decision value | 2.71 |
SVM RNA-class probability | 0.996539 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15770315 109 + 23771897 AAGGAGCAGCAGAUCCUAAACACAAUGGCAUUU----GGCAGAAAGGAGGGGUA-----AAAGCGGAAGCAAAGUCUUAAGACUUUUACUCGCUGCUCGAUUUGAAA--AAUCUCGAAUU ...(((((((...((((.....(((......))----)......)))).(((((-----(((((....))...(((....))))))))))))))))))(((((((..--....))))))) ( -36.60) >DroSec_CAF1 21919 109 + 1 AAGGAGCAGCAGAUCCCGAACACAAUGCCAUUU----GGCAGAAAGGAUGGGUA-----AAAGCGGAAGCAAAGUCUUAAGACUUUUACUCGCUGCUCGAUUUGAAA--AAUCUCGAAUU ...(((((((..((((.........((((....----))))....))))(((((-----(((((....))...(((....))))))))))))))))))(((((((..--....))))))) ( -39.72) >DroSim_CAF1 22989 109 + 1 AAGGAGCAGCAGAUCCUGAACACAAUGCCAUUU----GGCAGAAAGGAGGGGUA-----AAAGCGGAAGCAAAGUCUUAAGACUUUUACUCGCUGCUCGAUUUGAAA--AAUCUCGAAUU ...(((((((...((((........((((....----))))...)))).(((((-----(((((....))...(((....))))))))))))))))))(((((((..--....))))))) ( -41.30) >DroEre_CAF1 22210 109 + 1 AAGGAGCAGCAGAUCCUGAAUACAAUGCCAUUU----GGCAGAAAGGAGGGUUA-----GAAGCGGAAGCAAAGUCUUAAGGCUUUUACUCGCUACUCGAUUUAAAA--AAUCUCAAAUU ...(((.(((...((((........((((....----))))...))))((((..-----...((....))((((((....)))))).))))))).)))((((.....--))))....... ( -29.40) >DroAna_CAF1 18188 117 + 1 AAGGAGCAGCAGAUACGGACAACAAUA--AACGGGCCGUAAGAAAGGAUGAGGAGCUCGAAAGCGGAAGCAAAGUCUUAAGACCU-AGCUCGCUUCUCGAUUUAAAAAAAAACUAAAUUU ...(((.(((...(((((....(....--...)..)))))............(((((.(...((....))...(((....)))).-)))))))).)))...................... ( -26.60) >consensus AAGGAGCAGCAGAUCCUGAACACAAUGCCAUUU____GGCAGAAAGGAGGGGUA_____AAAGCGGAAGCAAAGUCUUAAGACUUUUACUCGCUGCUCGAUUUGAAA__AAUCUCGAAUU ...(((((((...((((........((((........))))...)))).(((((........((....))((((((....))))))))))))))))))(((((((........))))))) (-24.04 = -26.88 + 2.84)
Location | 15,770,315 – 15,770,424 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 84.30 |
Mean single sequence MFE | -26.95 |
Consensus MFE | -17.96 |
Energy contribution | -18.92 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.14 |
Mean z-score | -2.06 |
Structure conservation index | 0.67 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.748806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15770315 109 - 23771897 AAUUCGAGAUU--UUUCAAAUCGAGCAGCGAGUAAAAGUCUUAAGACUUUGCUUCCGCUUU-----UACCCCUCCUUUCUGCC----AAAUGCCAUUGUGUUUAGGAUCUGCUGCUCCUU .......((((--.....))))((((((((((((((.(((....)))))))))).......-----......((((....(((----((......))).))..))))...)))))))... ( -27.20) >DroSec_CAF1 21919 109 - 1 AAUUCGAGAUU--UUUCAAAUCGAGCAGCGAGUAAAAGUCUUAAGACUUUGCUUCCGCUUU-----UACCCAUCCUUUCUGCC----AAAUGGCAUUGUGUUCGGGAUCUGCUGCUCCUU .......((((--.....))))((((((((((((((.(((....)))))))))).......-----..(((........((((----....))))........)))....)))))))... ( -31.79) >DroSim_CAF1 22989 109 - 1 AAUUCGAGAUU--UUUCAAAUCGAGCAGCGAGUAAAAGUCUUAAGACUUUGCUUCCGCUUU-----UACCCCUCCUUUCUGCC----AAAUGGCAUUGUGUUCAGGAUCUGCUGCUCCUU .......((((--.....))))((((((((((((((.(((....)))))))))).......-----......((((..(((((----....))))....)...))))...)))))))... ( -28.90) >DroEre_CAF1 22210 109 - 1 AAUUUGAGAUU--UUUUAAAUCGAGUAGCGAGUAAAAGCCUUAAGACUUUGCUUCCGCUUC-----UAACCCUCCUUUCUGCC----AAAUGGCAUUGUAUUCAGGAUCUGCUGCUCCUU .......((((--.....))))(((((((((((..((((...........))))..)))).-----....(((......((((----....))))........)))....)))))))... ( -23.34) >DroAna_CAF1 18188 117 - 1 AAAUUUAGUUUUUUUUUAAAUCGAGAAGCGAGCU-AGGUCUUAAGACUUUGCUUCCGCUUUCGAGCUCCUCAUCCUUUCUUACGGCCCGUU--UAUUGUUGUCCGUAUCUGCUGCUCCUU .....((((...........((((((.((((((.-(((((....))))).)))..)))))))))................(((((..((..--......)).)))))...))))...... ( -23.50) >consensus AAUUCGAGAUU__UUUCAAAUCGAGCAGCGAGUAAAAGUCUUAAGACUUUGCUUCCGCUUU_____UACCCCUCCUUUCUGCC____AAAUGGCAUUGUGUUCAGGAUCUGCUGCUCCUU ......................((((((((((((.(((((....)))))))))).........................((((........))))...............)))))))... (-17.96 = -18.92 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:07 2006