Locus 5850

Sequence ID 3L_DroMel_CAF1
Location 15,770,018 – 15,770,129
Length 111
Max. P 0.685712
window9331

overview

Window 1

Location 15,770,018 – 15,770,129
Length 111
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 91.96
Mean single sequence MFE -28.18
Consensus MFE -22.39
Energy contribution -22.45
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -1.78
Structure conservation index 0.79
SVM decision value 0.32
SVM RNA-class probability 0.685712
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15770018 111 + 23771897
AAUUAGUGUGCACUCGAGAGCGUCCUGAAAGGAGCAGAAGACCAGAAGCUGAGUAGGAAAUUUGCAAA--AAAGAUCAAUUUUCCAGCGAAACGGAAAGCCGGAGUGCACAUU
....(((((((((((....((.(((.....)))))............((((....(((((((..(...--...)...)))))))))))....(((....)))))))))))))) ( -32.30)
>DroSec_CAF1 21623 111 + 1
AAUUAGUGUGCACUCGAGAGCGUCCUGAAAGGAGCAGAAGACCAGAAGCUGAGUAGGAAAUUUGCAAA--AAAGAUCAAUUUUCCAGCGAAACGGAAAGCCGGGGCGCACAUU
.....((((((.((((...((.(((.....)))))......((....((((....(((((((..(...--...)...))))))))))).....)).....))))))))))... ( -29.10)
>DroSim_CAF1 22692 111 + 1
AAUUAGUGUGCACUCGAGAGCGUCCUGAAAGGAGCAGAAGACCAGAAGCUGAGUAGGAAAUUUGCAAA--AAAGAUCAAUUUUCCAGCGAAACGGAAAGCCGGGGCGCACAUU
.....((((((.((((...((.(((.....)))))......((....((((....(((((((..(...--...)...))))))))))).....)).....))))))))))... ( -29.10)
>DroEre_CAF1 21930 102 + 1
AAUUAGAGUGCACUCG-----------AAAGGAGCAGAAGACCAGGAGCUGAGGAGGAAAUUUGCAAAAAAAAGAUCAAUUUUCCAGCGAAACGGAAAGCCGGGGCGCACAUU
.......((((..((.-----------...)).((............((((..(((...((((.........))))...)))..))))....(((....)))..))))))... ( -22.20)
>consensus
AAUUAGUGUGCACUCGAGAGCGUCCUGAAAGGAGCAGAAGACCAGAAGCUGAGUAGGAAAUUUGCAAA__AAAGAUCAAUUUUCCAGCGAAACGGAAAGCCGGGGCGCACAUU
....(((((((.(((..................((.......(((...)))....(((((.(((............))).))))).))....(((....)))))).))))))) (-22.39 = -22.45 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:05 2006