Locus 585

Sequence ID 3L_DroMel_CAF1
Location 1,690,653 – 1,690,743
Length 90
Max. P 0.717539
window894

overview

Window 4

Location 1,690,653 – 1,690,743
Length 90
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 83.17
Mean single sequence MFE -31.40
Consensus MFE -17.84
Energy contribution -17.12
Covariance contribution -0.72
Combinations/Pair 1.29
Mean z-score -2.29
Structure conservation index 0.57
SVM decision value 0.39
SVM RNA-class probability 0.717539
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1690653 90 + 23771897
C-UGGUUGGGUUAGGUCCGGAACCCCGGAAUCCGGAUUUCGGAUUUCGACUC---CGGAUUUGGUUCUACUUGGGUUUCACUUUCGGGUUCAAA
.-.....(..(((((((((((....(((((((((.....)))))))))..))---)))))))))..).(((((((.......)))))))..... ( -32.50)
>DroSec_CAF1 52666 89 + 1
C-UGGUUGGGUUAGGUCCGGAAU-CCGGAAUUCGGAAUCCGGAUUUCGACUC---CGGAUUCGGUUCUACUUGGGUUUCACUUUCGGGUUCAAA
.-.....(..(..((((((((..-.((((((((((...))))))))))..))---))))))..)..).(((((((.......)))))))..... ( -30.70)
>DroEre_CAF1 56118 82 + 1
C-UGGUUGGGCUAGGUCCGGAAU-CCGGA-------AUCCGGAUUUCGACUC---CGGAUUCGGUUCCACUUGGGUUUCACUUUCGGGUUCAAA
.-....(((((...)))))((((-(((((-------(((((((.......))---)))))))((..((.....))..)).....)))))))... ( -30.80)
>DroYak_CAF1 53859 89 + 1
C-UGGUUGGGUUAGGUCCGGAAU-CCGGAAUGCGAAAUCCGGAUUUCGACAC---CGGAUUUCGUUCUACGGGGGUUUCACUUUCGGGUUCAAA
.-...(((..((.((..((((((-((((..((((((((....)))))).)))---)))))))))..)).((..((.....))..))))..))). ( -32.80)
>DroAna_CAF1 50608 87 + 1
UUUGGUUGAGCUAGGUCCGGAAU-CCGGAAUCCA-CAUCCGGAUUUGAGUUCCAGCGGAUUCGGUU-----UGGAUUUCACUUUCGGGUUCAAA
.....((((((.....((((((.-..((((((((-...(((((((((........)))))))))..-----))))))))..)))))))))))). ( -30.20)
>consensus
C_UGGUUGGGUUAGGUCCGGAAU_CCGGAAUCCG_AAUCCGGAUUUCGACUC___CGGAUUCGGUUCUACUUGGGUUUCACUUUCGGGUUCAAA
.....((((((....(((((....))))).........(((((....(((((....(((......)))....))))).....))))))))))). (-17.84 = -17.12 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:57 2006