Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,769,373 – 15,769,492 |
Length | 119 |
Max. P | 0.584333 |
Location | 15,769,373 – 15,769,492 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.68 |
Mean single sequence MFE | -23.38 |
Consensus MFE | -20.66 |
Energy contribution | -20.35 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.16 |
Mean z-score | -1.53 |
Structure conservation index | 0.88 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584333 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15769373 119 + 23771897 -GGAAAUUUAUUCAUGUUCCUCAUUUUUUUAUUGUGUUUUACUCGUAAUUUGAUUUUGAUUUGGGAAUUUUAAUUAAUAAUCAUGUUUUUCGGGGGGAAACGCUUUGAAUUUUUGAUGAA -((((...........))))(((((..((((..(((((((.((((.(((.(((((((((((..........)))))).))))).)))...))))..)))))))..)))).....))))). ( -23.90) >DroSec_CAF1 20963 118 + 1 -GGAAAUUUAUUCAUGUUUCUCGUUU-UUUAUUGUGAUUUACUCGUAAUUUGAUUUUGAUUUGGGAAUUUUAAUUAAUAAUCAUGUUUUUCGGGGGGAAACGCUUUGAAUUUUUGAUGAA -(((((((((....((((((((....-((......))....((((.(((.(((((((((((..........)))))).))))).)))...))))))))))))...)))))))))...... ( -19.70) >DroEre_CAF1 21296 118 + 1 -GGAAAUUUAUUCAUGUUCCUCGUUU-UUUAUUGUGUUUUACUCGUAAUUUGAUUUUGAUUUGGGAAUUUUAAUUAAUAAUCAUGUUUUUCAGGGGGAAACGCUUUGAAUUUUUGAUGAA -((((...........))))(((((.-((((..((((((..(((..(((.(((((((((((..........)))))).))))).))).....)))..))))))..)))).....))))). ( -21.00) >DroAna_CAF1 17190 119 + 1 UGGGGAUUUGUUCAUGUUCCUCUUUU-UUUAUUGUGUUUUACUCGUAAUAUGAUUUUGAUUUGGGAAUUUUAAUUAAUAAUCAUGUUUUUCGAGGGGAGACGCUUUGAAUUUUUGAUGAA .(((((...........)))))....-((((..(((((((.((((.(((((((((((((((..........)))))).)))))))))...))))..)))))))..))))........... ( -28.90) >consensus _GGAAAUUUAUUCAUGUUCCUCGUUU_UUUAUUGUGUUUUACUCGUAAUUUGAUUUUGAUUUGGGAAUUUUAAUUAAUAAUCAUGUUUUUCGGGGGGAAACGCUUUGAAUUUUUGAUGAA .((((...........))))(((((..((((..(((((((.((((.(((.(((((((((((..........)))))).))))).)))...))))..)))))))..)))).....))))). (-20.66 = -20.35 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:02:04 2006