Locus 5845

Sequence ID 3L_DroMel_CAF1
Location 15,766,280 – 15,766,376
Length 96
Max. P 0.768582
window9323

overview

Window 3

Location 15,766,280 – 15,766,376
Length 96
Sequences 4
Columns 97
Reading direction reverse
Mean pairwise identity 96.22
Mean single sequence MFE -15.44
Consensus MFE -15.30
Energy contribution -15.30
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.99
SVM decision value 0.52
SVM RNA-class probability 0.768582
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15766280 96 - 23771897
UCCGCAUCCCCCAAUAAACCGAACAAGCCGCACUAUGUUUUGGCAUUUGGCUCACUUGUUUUUCCUUUUCGAUGUGUCUCGCUUUUUUUUCUCC-CC
..((((((............(((((((..((...((((....))))...))...))))))).........))))))..................-.. ( -15.30)
>DroSec_CAF1 17870 97 - 1
UCCGCAUCCCCCAAUAAACCGAACAAGCCGCACUAUGUUUUGGCAUUUGGCUCACUUGUUUUUCCUUUUCGAUGUGUCUCGCCUUUUUUUCUCCCCC
..((((((............(((((((..((...((((....))))...))...))))))).........))))))..................... ( -15.30)
>DroSim_CAF1 18880 97 - 1
UCCGCAUCCCCCAAUAAACCGAACAAGCCGCACUAUGUUUUGGCAUUUGGCUCACUUGUUUUUCCUUUUCGAUGUGUCUCGCUUUUUUUUCUCCCCC
..((((((............(((((((..((...((((....))))...))...))))))).........))))))..................... ( -15.30)
>DroEre_CAF1 18250 92 - 1
UCCGCAUCC-CCAAUAAACCGAACAAGCCGCACUAUGUUUUGGCAUUUGGCUCACUUGUUUUUCCUUUUCGAUGUGUCUCGCCUUUUUU----CCCC
..((((((.-..........(((((((..((...((((....))))...))...))))))).........)))))).............----.... ( -15.85)
>consensus
UCCGCAUCCCCCAAUAAACCGAACAAGCCGCACUAUGUUUUGGCAUUUGGCUCACUUGUUUUUCCUUUUCGAUGUGUCUCGCCUUUUUUUCUCCCCC
..((((((............(((((((..((...((((....))))...))...))))))).........))))))..................... (-15.30 = -15.30 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:57 2006