Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,764,224 – 15,764,324 |
Length | 100 |
Max. P | 0.514345 |
Location | 15,764,224 – 15,764,324 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 96.83 |
Mean single sequence MFE | -30.80 |
Consensus MFE | -27.75 |
Energy contribution | -28.12 |
Covariance contribution | 0.38 |
Combinations/Pair | 1.06 |
Mean z-score | -1.59 |
Structure conservation index | 0.90 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514345 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15764224 100 - 23771897 UGAGUUGGGGCAAAUUAGUCGAUGAUUUGUUCAAAGUGUUCGGCCAAAACUUUCGGUGAACUCUCACGCUGAUCCUUAACUCCUGCAGCCCUUUGGGGCU .(((((((((...(((((.((.(((...(((((..(.(((.......)))...)..)))))..)))))))))))))))))))....(((((....))))) ( -31.70) >DroSec_CAF1 15800 100 - 1 UGAGUCGGGGCAAAUUAGUCGAUGAUUUGUUCAAAGUGUUUGGCCAAAACUUUCGGUGAACUCUCACACUGAUCCUUAACUCCUGCAGCCCUUUGGGGCU .((((..(((...((((((.(.(((...(((((..(.((((.....))))...)..)))))..)))))))))))))..))))....(((((....))))) ( -30.70) >DroSim_CAF1 16799 100 - 1 UGAGUCGGGGCAAAUUAGUCGAUGAUUUGUUCAAAGUGUUUGGCCAAAACUUUCGGUGAACUCUCACGCUGAUCCUUAACUCCUGCAGCCCUUUGGGGCU .((((..(((...(((((.((.(((...(((((..(.((((.....))))...)..)))))..)))))))))))))..))))....(((((....))))) ( -32.20) >DroEre_CAF1 15930 99 - 1 UGAGUCGGG-CCAAUUAGUCGAUGAUUUGUUCAAAGUGUUCGGCCAAAACUUUCGGUGAACUCUCACGCUGAUCCCUAACUCCUGCAGCCCUUUGGGGCU .((((..((-...(((((.((.(((...(((((..(.(((.......)))...)..)))))..)))))))))).))..))))....(((((....))))) ( -28.60) >consensus UGAGUCGGGGCAAAUUAGUCGAUGAUUUGUUCAAAGUGUUCGGCCAAAACUUUCGGUGAACUCUCACGCUGAUCCUUAACUCCUGCAGCCCUUUGGGGCU .((((..(((...((((((.(.(((...(((((..(.((((.....))))...)..)))))..)))))))))))))..))))....(((((....))))) (-27.75 = -28.12 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:50 2006