Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,689,649 – 1,689,762 |
Length | 113 |
Max. P | 0.635939 |
Location | 1,689,649 – 1,689,762 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 80.39 |
Mean single sequence MFE | -20.57 |
Consensus MFE | -15.82 |
Energy contribution | -15.57 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.03 |
Mean z-score | -1.23 |
Structure conservation index | 0.77 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.635939 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1689649 113 - 23771897 UGAAUGCCUUGCGAAAGAUUUCAUGGUAAUUC---CGCCGGGUUAUAACAAUUUACAAAUUAUGUAAUCGAAAUUUAUUGCCCA---GCAUAGCUGCUCAUGCCGCUCCUCUGUAUCAA (((((((...((((.(((((((.((((.....---.))))(((((((..((((....)))).)))))))))))))).))))...---))))(((.((....)).)))........))). ( -25.40) >DroPse_CAF1 57461 95 - 1 UUAAUGCUUUGUGAAAGAUUUCAUGGUAAUUUCAUCGCCGGGUUAUAACAAUUUACAAAUUAUGUAAUCGAAAUUUAUUGCCUG---GCAUAGCUGCU--------------------- .....((((..((((....))))..)..........(((((((.((((....(((((.....))))).......)))).)))))---))..)))....--------------------- ( -20.80) >DroEre_CAF1 55126 94 - 1 UUAAUGCCUUGCGAAAGAUUUCAUGGUUACUU---CGCCGGGUUAUAACAAUUUACAAAUUAUGUAAUCGAAAUUUAUUGCCCA---GCAUAGCAUAG----CU--------------- ...((((..(((............(((.....---.)))((((.((((....(((((.....))))).......)))).)))).---)))..))))..----..--------------- ( -20.40) >DroWil_CAF1 64227 92 - 1 UUAAUGCUUUGUGAAAGAUUUCAUGGUAAUUU---CGCCGGGUUAUAACAAUUUGCAAAUUAUGUAAUCGAAAUUUAUUGCCAUAGCGCAUAGUU------------------------ .....(((..(..(.(((((((.((((.....---.))))(((((((..((((....)))).)))))))))))))).)..)...)))........------------------------ ( -17.50) >DroYak_CAF1 52780 109 - 1 UUAAUGCCUUGCGAAAGAUUUCAUGGUAAUUU---CGCCGGGUUAUAACAAUUUACAAAUUAUGUAAUCGAAAUUUAUUGCCCA---GCAUUGCUCCU----CUGCUCCUCCACACCAG ..(((((...((((.(((((((.((((.....---.))))(((((((..((((....)))).)))))))))))))).))))...---)))))((....----..))............. ( -21.90) >DroPer_CAF1 57483 95 - 1 UUAAUGCUUUGUGAAAGAUUUCAUGGUAAUUUCAUCGCCGGGUUAUAACAAUUUACAAAUUAUGUAAUCGAAAUUUAUUGCCUU---GCAUAGCUGCU--------------------- ...((((...(..(.(((((((.((((.........))))(((((((..((((....)))).)))))))))))))).)..)...---)))).......--------------------- ( -17.40) >consensus UUAAUGCCUUGCGAAAGAUUUCAUGGUAAUUU___CGCCGGGUUAUAACAAUUUACAAAUUAUGUAAUCGAAAUUUAUUGCCCA___GCAUAGCUGCU_____________________ ...((((...((((.(((((((.((((.........))))(((((((..((((....)))).)))))))))))))).))))......))))............................ (-15.82 = -15.57 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:56 2006