Locus 584

Sequence ID 3L_DroMel_CAF1
Location 1,689,649 – 1,689,762
Length 113
Max. P 0.635939
window893

overview

Window 3

Location 1,689,649 – 1,689,762
Length 113
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 80.39
Mean single sequence MFE -20.57
Consensus MFE -15.82
Energy contribution -15.57
Covariance contribution -0.25
Combinations/Pair 1.03
Mean z-score -1.23
Structure conservation index 0.77
SVM decision value 0.21
SVM RNA-class probability 0.635939
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1689649 113 - 23771897
UGAAUGCCUUGCGAAAGAUUUCAUGGUAAUUC---CGCCGGGUUAUAACAAUUUACAAAUUAUGUAAUCGAAAUUUAUUGCCCA---GCAUAGCUGCUCAUGCCGCUCCUCUGUAUCAA
(((((((...((((.(((((((.((((.....---.))))(((((((..((((....)))).)))))))))))))).))))...---))))(((.((....)).)))........))). ( -25.40)
>DroPse_CAF1 57461 95 - 1
UUAAUGCUUUGUGAAAGAUUUCAUGGUAAUUUCAUCGCCGGGUUAUAACAAUUUACAAAUUAUGUAAUCGAAAUUUAUUGCCUG---GCAUAGCUGCU---------------------
.....((((..((((....))))..)..........(((((((.((((....(((((.....))))).......)))).)))))---))..)))....--------------------- ( -20.80)
>DroEre_CAF1 55126 94 - 1
UUAAUGCCUUGCGAAAGAUUUCAUGGUUACUU---CGCCGGGUUAUAACAAUUUACAAAUUAUGUAAUCGAAAUUUAUUGCCCA---GCAUAGCAUAG----CU---------------
...((((..(((............(((.....---.)))((((.((((....(((((.....))))).......)))).)))).---)))..))))..----..--------------- ( -20.40)
>DroWil_CAF1 64227 92 - 1
UUAAUGCUUUGUGAAAGAUUUCAUGGUAAUUU---CGCCGGGUUAUAACAAUUUGCAAAUUAUGUAAUCGAAAUUUAUUGCCAUAGCGCAUAGUU------------------------
.....(((..(..(.(((((((.((((.....---.))))(((((((..((((....)))).)))))))))))))).)..)...)))........------------------------ ( -17.50)
>DroYak_CAF1 52780 109 - 1
UUAAUGCCUUGCGAAAGAUUUCAUGGUAAUUU---CGCCGGGUUAUAACAAUUUACAAAUUAUGUAAUCGAAAUUUAUUGCCCA---GCAUUGCUCCU----CUGCUCCUCCACACCAG
..(((((...((((.(((((((.((((.....---.))))(((((((..((((....)))).)))))))))))))).))))...---)))))((....----..))............. ( -21.90)
>DroPer_CAF1 57483 95 - 1
UUAAUGCUUUGUGAAAGAUUUCAUGGUAAUUUCAUCGCCGGGUUAUAACAAUUUACAAAUUAUGUAAUCGAAAUUUAUUGCCUU---GCAUAGCUGCU---------------------
...((((...(..(.(((((((.((((.........))))(((((((..((((....)))).)))))))))))))).)..)...---)))).......--------------------- ( -17.40)
>consensus
UUAAUGCCUUGCGAAAGAUUUCAUGGUAAUUU___CGCCGGGUUAUAACAAUUUACAAAUUAUGUAAUCGAAAUUUAUUGCCCA___GCAUAGCUGCU_____________________
...((((...((((.(((((((.((((.........))))(((((((..((((....)))).)))))))))))))).))))......))))............................ (-15.82 = -15.57 +  -0.25) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:56 2006