Locus 5839

Sequence ID 3L_DroMel_CAF1
Location 15,761,897 – 15,761,994
Length 97
Max. P 0.681837
window9304

overview

Window 4

Location 15,761,897 – 15,761,994
Length 97
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.46
Mean single sequence MFE -35.48
Consensus MFE -24.06
Energy contribution -24.26
Covariance contribution 0.20
Combinations/Pair 1.09
Mean z-score -1.91
Structure conservation index 0.68
SVM decision value 0.31
SVM RNA-class probability 0.681837
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15761897 97 - 23771897
CUUUUGCGCUCUAACUUCAUUUUCA----CGACGCCUGUGAACU-UUGUUGCUGUUUUGCGGCUUGUUUGCAUAUGUCG-GUUGGGAAUGAUGGC---------A-GAGGGGG-------
......(.((((..(.(((((..((----(((((..((..(((.-..(((((......)))))..)))..))..)))))-..))..))))).)..---------)-))).)..------- ( -36.20)
>DroSec_CAF1 13496 97 - 1
CUUUUGCGCUCUAACUUCAUUUUCA----CGACGCCCGUGAACU-UUGUUGCUGUUUUGCGGCUUGUUUGCAUAUGUCG-GUUGGGAAUGAUGGC---------A-GAGGGGG-------
......(.((((..(.(((((..((----(((((...(..(((.-..(((((......)))))..)))..)...)))))-..))..))))).)..---------)-))).)..------- ( -33.60)
>DroSim_CAF1 13792 97 - 1
CUUUUGCGCUCUAACUUCAUUUUCA----CGACGCCCGUGAACU-UUGUUGCUGUUUUGCGGCUUGUUUGCAUAUGUCG-GUUGGGACUGAUGGC---------A-GAGGGGG-------
......(.((((..(.(((.(..((----(((((...(..(((.-..(((((......)))))..)))..)...)))))-..))..).))).)..---------)-))).)..------- ( -29.90)
>DroEre_CAF1 13695 97 - 1
CUUUUGCGCUCUAACUUCAUUUUCC----UGACGCCCGUGAACU-UUGUUGCUGUUCUGCGGCUUGUUUGCAUAUGUCG-GUUGGGAAUGAUGGC---------C-GAGGGGG-------
((((((.(((......(((((..((----(((((...(..(((.-..(((((......)))))..)))..)...)))))-)..)..))))).)))---------)-)))))..------- ( -31.30)
>DroAna_CAF1 8738 120 - 1
CGCUGGCUCUUUAACUUCACUUUCGGGGCCGACGCCCGUGAACUUUUGUUGCUGUUUUGCGGCUUGUUUGCAUAUGUCGAGUGGGGAGUGAUGGAGUCUGUGGCGGGAGGAGCUCUGCCC
.((.((((((...(((((...((((((((....))))(..(((....(((((......)))))..)))..)......))))...)))))...)))))).))((((((......)))))). ( -46.40)
>consensus
CUUUUGCGCUCUAACUUCAUUUUCA____CGACGCCCGUGAACU_UUGUUGCUGUUUUGCGGCUUGUUUGCAUAUGUCG_GUUGGGAAUGAUGGC_________A_GAGGGGG_______
..............(.(((((..((....(((((...(..(((....(((((......)))))..)))..)...)))))...))..))))).)........................... (-24.06 = -24.26 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:39 2006