Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,759,232 – 15,759,351 |
Length | 119 |
Max. P | 0.940241 |
Location | 15,759,232 – 15,759,351 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.40 |
Mean single sequence MFE | -25.18 |
Consensus MFE | -25.18 |
Energy contribution | -25.18 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.38 |
Structure conservation index | 1.00 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.940241 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15759232 119 + 23771897 CAAGUUUUAUCAGCUGCAAAACAGUUGCCAUUGAAAUGGCGCGGAAAGUCGUUAGAUAGAUGGCCCGAAAGCAAAACAAAAAAUAA-AGGAGCAGCCAAGGAGUCGAACAAAGCAAGGAC ...((((..((.(((((.........((((((....((((((.....).)))))....)))))).(....)...............-....)))))....))...))))........... ( -25.60) >DroSec_CAF1 10860 119 + 1 CAAGUUUUAUCAGCUGCAAAACAGUUGCCAUUGAAAUGGCGCAGAAAGUCGUUAGAUAGAUGGCCCGAAAGCAAAACAAAAAAUAA-AGGAGCAGCCAAGGAGUUGAACAAAGCAAGGAC ...((((..((.(((((.........((((((....((((((.....).)))))....)))))).(....)...............-....)))))....))...))))........... ( -25.60) >DroSim_CAF1 11132 119 + 1 CAAGUUUUAUCAGCUGCAAAACAGUUGCCAUUGAAAUGGCGCAGAAAGUCGUUAGAUAGAUGGCCCGAAAGCAAAACAAAAAAUAA-AGGAGCAGCCAAGGAGUCGAACAAAGCAAGGAC ...((((..((.(((((.........((((((....((((((.....).)))))....)))))).(....)...............-....)))))....))...))))........... ( -24.90) >DroEre_CAF1 11113 119 + 1 CAAGUUUUAUCAGCUGCAAAACAGUUGCCAUUGAAAUGGCGCAGAAAGUCGUUAGAUAGAUGGCCCGAAAGCAAAACAAAAAAUAA-AGGAGCAGCCAAGGAGUCGAACAAAGCGAGGAC ...((((..((.(((((.........((((((....((((((.....).)))))....)))))).(....)...............-....)))))....))...))))........... ( -24.90) >DroAna_CAF1 5663 116 + 1 CAAGUUUUAUCAGCUGCAAAACAGUUGCCAUUGAAAUGGCGCAGAAAGUCGUUAGAUAGAUGGCCCGAAAGCAAAACAAAAAAUAAAAGGAGCAGCCAAGGAGUCGAACAAA----GGAC ...((((..((.(((((.........((((((....((((((.....).)))))....)))))).(....)....................)))))....))...))))...----.... ( -24.90) >consensus CAAGUUUUAUCAGCUGCAAAACAGUUGCCAUUGAAAUGGCGCAGAAAGUCGUUAGAUAGAUGGCCCGAAAGCAAAACAAAAAAUAA_AGGAGCAGCCAAGGAGUCGAACAAAGCAAGGAC ...((((..((.(((((.........((((((....((((((.....).)))))....)))))).(....)....................)))))....))...))))........... (-25.18 = -25.18 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:35 2006