Locus 5832

Sequence ID 3L_DroMel_CAF1
Location 15,754,959 – 15,755,075
Length 116
Max. P 0.889849
window9283

overview

Window 3

Location 15,754,959 – 15,755,075
Length 116
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 80.99
Mean single sequence MFE -21.22
Consensus MFE -16.99
Energy contribution -17.93
Covariance contribution 0.94
Combinations/Pair 1.10
Mean z-score -1.89
Structure conservation index 0.80
SVM decision value 0.96
SVM RNA-class probability 0.889849
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15754959 116 + 23771897
CAGGAUAAUACCAACACACUCUCACAAUGCAGCCCGAUUAAUUAGGGUGGCUCGAAUUAUCGGUAUGGGCAACUACAAAAAUAAAAGCAAAAUAUAUAAAACUGAGAUUUUUAAAA
(((....(((((................((.((((.........)))).))..((....)))))))((....))...........................)))............ ( -17.60)
>DroSec_CAF1 6633 104 + 1
CAGGAUAAUACCAACACACUCUCACAAUGCCGCCCCAUUAAUUAGGGUGGCUCGAAUUAUCGGUAAAGGAAACUACAAA------------UAAUAUACAACUGAGAUUUUUAAAA
..((......)).......(((((....(((((((.........)))))))....(((((..((..((....))))..)------------)))).......)))))......... ( -23.20)
>DroSim_CAF1 6869 114 + 1
CAGGAUAAUACCAACACACUCUCACAAUGCCGCCCGAUUAAUUAGGGUGGCUCGAAUUAUCGGUAUAGGAAACUAGAAAAAUAAAAGCAAAAUAUAUACAAC--AGAUCUUUAAAA
.(((((..((((................(((((((.........)))))))..((....))))))(((....)))...........................--..)))))..... ( -23.80)
>DroEre_CAF1 6716 95 + 1
CAGGAUAAUACCAACACACUCUCACAACGCCGCCCGAUUAAUUAGGGUGGCUCGAAUUAUCGGAAG-GGGAACUAAAU--------------------GAACUAGGAUUUUUAAAA
..((......)).......((((.....(((((((.........)))))))((((....))))...-)))).......--------------------.................. ( -20.30)
>consensus
CAGGAUAAUACCAACACACUCUCACAAUGCCGCCCGAUUAAUUAGGGUGGCUCGAAUUAUCGGUAUAGGAAACUACAAA____________AUAUAUACAACUGAGAUUUUUAAAA
..((......)).......(((((....(((((((.........)))))))((((....))))...((....))............................)))))......... (-16.99 = -17.93 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:18 2006