Locus 5831

Sequence ID 3L_DroMel_CAF1
Location 15,753,934 – 15,754,045
Length 111
Max. P 0.947755
window9282

overview

Window 2

Location 15,753,934 – 15,754,045
Length 111
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 93.30
Mean single sequence MFE -29.25
Consensus MFE -25.35
Energy contribution -25.73
Covariance contribution 0.37
Combinations/Pair 1.08
Mean z-score -2.30
Structure conservation index 0.87
SVM decision value 1.37
SVM RNA-class probability 0.947755
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15753934 111 - 23771897
GGGCUCUUGUGCGAUUUUGGCUUGCGGAAUGAUGAACCUGAAAAGGAAAGGGUGCGAAUAUCCA-------CAGGAGAGAUAUAAAGGAAAAUAAGCCAAAAGGGGAGCCAAAGGAUU
.(((((((......((((((((((............(((....)))...(((((....))))).-------.....................)))))))))).)))))))........ ( -29.60)
>DroSec_CAF1 5612 111 - 1
GGGCUCUUGUGCGAUUUUGGCUUGCGGAAUGAUGAACCUGAAAAGGAAAGGGUGCGAAUAUCCA-------CAGGAGAGAUAUAAAGGAAAAUAAGCCAAAAGAGGCGCCAAAGGAUU
.((((((((((.(((.((.((...((......))..(((....))).......)).)).)))))-------)))))...................(((......))))))........ ( -27.80)
>DroSim_CAF1 5852 111 - 1
GGGCUCUUGUGCGAUUUUGGCUUGCGGAAUGAUGAACUUGAAAAGGAAAGGGUGCGAAUAUCCA-------CAGGAGAGAUAUAAAGGAAAAUAAGCCAAAAGGGGCGCCAAAGGAUU
.((((((((((.(((.((.((...((......))..(((....))).......)).)).)))))-------)))))...................(((......))))))........ ( -25.00)
>DroEre_CAF1 5703 118 - 1
GGGCUCUUGUGCGAUUUUGGCUUGCGGAAUGAUGAACCUGAAAAGGAAAGGGUGCGAGUAUGCUCAGCCACCAGGAGAAAUAUAAAGGAAAAUAAGCCAAAAGGGGAGCCAAAGGACU
.(((((((......((((((((((............(((....)))....((((((((....))).).))))....................)))))))))).)))))))........ ( -34.60)
>consensus
GGGCUCUUGUGCGAUUUUGGCUUGCGGAAUGAUGAACCUGAAAAGGAAAGGGUGCGAAUAUCCA_______CAGGAGAGAUAUAAAGGAAAAUAAGCCAAAAGGGGAGCCAAAGGAUU
.(((((((......((((((((((............(((....)))...(((((....))))).............................)))))))))).)))))))........ (-25.35 = -25.73 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:17 2006