Locus 5829

Sequence ID 3L_DroMel_CAF1
Location 15,752,963 – 15,753,083
Length 120
Max. P 0.928577
window9279

overview

Window 9

Location 15,752,963 – 15,753,083
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 98.75
Mean single sequence MFE -41.77
Consensus MFE -41.67
Energy contribution -41.67
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.41
Structure conservation index 1.00
SVM decision value 1.19
SVM RNA-class probability 0.928577
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15752963 120 - 23771897
CCCGCUGACAUGCAAAAAAGGGUAAAUGAGUGACAGGACAAAAAGGAAUCGUGGGGUGAGGCCGACCCACCAAGGGUUAACAUCCGCCUCUCUCUGUCGCUUAACCCUCGUUUGCUUUUU
...........(((((..(((((...(((((((((((.(.....).....(.((((((..(..(((((.....)))))..)...)))))).)))))))))))))))))..)))))..... ( -41.70)
>DroSec_CAF1 4640 120 - 1
CCCGCUGACAUGCAAAAAAGGGUAAAUGAGUGACAGGACAAAAAGGAAUCGUGGGGUGAGGCCGACCCACCAAGGGUUAACAUCCGCCUCUCUCUGUCGCUUAACCCUCGUUUGCUUUUU
...........(((((..(((((...(((((((((((.(.....).....(.((((((..(..(((((.....)))))..)...)))))).)))))))))))))))))..)))))..... ( -41.70)
>DroSim_CAF1 4889 120 - 1
CCCGCUGACAUGCAAAAAAGGGUAAAUGAGUGACAGGACAAAAAGGAAUCGUGGGGUGAGGCCGACCCACCAAGGGUUAACAUCCGCCUCUCUCUGUCGCUUAACCCUCGUUUGCUUUCU
......((...(((((..(((((...(((((((((((.(.....).....(.((((((..(..(((((.....)))))..)...)))))).)))))))))))))))))..)))))..)). ( -41.80)
>DroEre_CAF1 4683 120 - 1
CCCGCUGACAUGCAAAAAAGGGUAAAUGAGUGACAGGACAAAAAAGGAUCGUGGGGUGAGGCCGACCCACCAAGGGUUAACAUCCGCCUCUCUCUGUCGCUUAACCCUCGUUUGCUUUUU
...........(((((..(((((...(((((((((((.(......)....(.((((((..(..(((((.....)))))..)...)))))).)))))))))))))))))..)))))..... ( -41.90)
>consensus
CCCGCUGACAUGCAAAAAAGGGUAAAUGAGUGACAGGACAAAAAGGAAUCGUGGGGUGAGGCCGACCCACCAAGGGUUAACAUCCGCCUCUCUCUGUCGCUUAACCCUCGUUUGCUUUUU
...........(((((..(((((...(((((((((((.(......)....(.((((((..(..(((((.....)))))..)...)))))).)))))))))))))))))..)))))..... (-41.67 = -41.67 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:15 2006