Locus 5826

Sequence ID 3L_DroMel_CAF1
Location 15,751,074 – 15,751,194
Length 120
Max. P 0.863312
window9265

overview

Window 5

Location 15,751,074 – 15,751,194
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 96.94
Mean single sequence MFE -31.58
Consensus MFE -31.10
Energy contribution -30.35
Covariance contribution -0.75
Combinations/Pair 1.10
Mean z-score -1.85
Structure conservation index 0.98
SVM decision value 0.84
SVM RNA-class probability 0.863312
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15751074 120 - 23771897
UUAUAGGCUGCUCUAUUGUACUAGGGGCAAGUGUGUAUAAUCAAUUUUAUAACACGAUCCUUAUGCCCGAGGAAAAUUCGAAAACAAUAGAUCGACGUGUGCUUAACACGAUAUUCGUGU
...((((((((((((((((.....(((((..(((((((((......)))).))))).......)))))(((.....)))....)))))))).....))).)))))(((((.....))))) ( -30.50)
>DroSec_CAF1 2771 120 - 1
UUAUAGGCUGCUCUAUUGUACUAGGGGCAAGUGUGUAUAAUCAAUUUUAUAACACGAUCCUUAUGCCCGGGGAAAAUUCGAAAACAAUAGAUCGACGUGUGCUUAACACGAUAUUCGUGU
...((((((((((((((((.((..(((((..(((((((((......)))).))))).......))))).))((....))....)))))))).....))).)))))(((((.....))))) ( -29.60)
>DroSim_CAF1 3004 120 - 1
UUAUAGGCUGCUCUAUUGUACUAGGGGCAAGUGUGUAUAAUCAAUUUUAUAACACGAUCCUUAUGCCCGGGGAAAAUUCGAAAACAAUAGAUCGACGUGUGCUUAACACGAUAUUCGUGU
...((((((((((((((((.((..(((((..(((((((((......)))).))))).......))))).))((....))....)))))))).....))).)))))(((((.....))))) ( -29.60)
>DroEre_CAF1 2758 120 - 1
UUAUAGUCUGCUCUAUUGUACGAGGGACCAGUGUGUAUAAUCAAUUUUAUAACACGAUCCUUCUGCCCGAGGAAAACUCGAAAACAAUAGAUCGACGUGUGCUUAACACGAUAUUCGUGU
.....(((.(.((((((((..((((((...((((.(((((......)))))))))..))))))....((((.....))))...)))))))).)))).........(((((.....))))) ( -36.60)
>consensus
UUAUAGGCUGCUCUAUUGUACUAGGGGCAAGUGUGUAUAAUCAAUUUUAUAACACGAUCCUUAUGCCCGAGGAAAAUUCGAAAACAAUAGAUCGACGUGUGCUUAACACGAUAUUCGUGU
.((((.(.((.((((((((..((((((...((((.(((((......)))))))))..))))))....((((.....))))...)))))))).)).).))))....(((((.....))))) (-31.10 = -30.35 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:02 2006