Locus 5825

Sequence ID 3L_DroMel_CAF1
Location 15,750,764 – 15,750,877
Length 113
Max. P 0.793605
window9264

overview

Window 4

Location 15,750,764 – 15,750,877
Length 113
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 88.71
Mean single sequence MFE -24.62
Consensus MFE -18.77
Energy contribution -19.77
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.91
Structure conservation index 0.76
SVM decision value 0.59
SVM RNA-class probability 0.793605
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15750764 113 + 23771897
ACCAUAAGGUA-CAUACAUUGAUGCCA----CAUAUACUUAACAAAAGCGAGUUUCCCCUUUUGAAAACGUGGGCACACAAAGAACCACAAACAAA-GGAA-UGGAACUCGAUGUCUCGC
..(((..((((-((.....)).)))).----.................((((((((..((((((.....((((............))))...))))-))..-.)))))))))))...... ( -23.20)
>DroSec_CAF1 2462 111 + 1
ACCAUAAGGUA-CAUCCA----UGCCA----CAUAUACUUAACAAAAGCGAGUUUCCCCUUUUGAAAACGUGGGCACACAAAGAACCACAAACAAAAGGAAUUGGAACUCGAUGUCUCGC
..(((..((((-......----)))).----.................((((((((.(((((((.....((((............))))...)))))))....)))))))))))...... ( -24.50)
>DroSim_CAF1 2693 111 + 1
ACCAUAAGGUA-CAUCCA----UGCCA----CAUAUACUUAACAAAAGCGAGUUUCCCCUUUUGAAAACGUGGGCACACAAAGAACCACAAACAAAAGGAAUUGGAACUCGAUGUCUCGC
..(((..((((-......----)))).----.................((((((((.(((((((.....((((............))))...)))))))....)))))))))))...... ( -24.50)
>DroEre_CAF1 2451 113 + 1
ACCAAAUGGUUUCUUAUA----UGGCAUACGUAUACACCUAACAAAAGCGAGU-UCCCCUUUUAAAAACGUGGGCGCACAAAGAACCACAAACAAA-GGAA-UGGAACUCGGUGUCUCGC
(((....(((....((((----((.....)))))).)))..........((((-((((((((.......((((...(.....)..))))....)))-))..-.))))))))))....... ( -26.30)
>consensus
ACCAUAAGGUA_CAUACA____UGCCA____CAUAUACUUAACAAAAGCGAGUUUCCCCUUUUGAAAACGUGGGCACACAAAGAACCACAAACAAA_GGAA_UGGAACUCGAUGUCUCGC
(((....)))......................................((((((((.(((((((.....((((............))))...)))))))....))))))))......... (-18.77 = -19.77 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:01:01 2006