Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,749,101 – 15,749,261 |
Length | 160 |
Max. P | 0.991409 |
Location | 15,749,101 – 15,749,221 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -47.67 |
Consensus MFE | -47.07 |
Energy contribution | -47.30 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.05 |
Mean z-score | -3.08 |
Structure conservation index | 0.99 |
SVM decision value | 2.27 |
SVM RNA-class probability | 0.991409 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15749101 120 + 23771897 GUUUUUCUUUGUAUUUUACGAUUCGGUUUUUGGGCGUGUCCUUGCCAGGCUUUUGGCCGCAUUAAGUGCACAGUUGCGUGCACACACGCCCAACCCGUUCGAAGGUGUAAAAGGGGGCGU (((((..((((((((((.(((..(((...((((((((((...(((..(((.....))))))....((((((......)))))))))))))))).))).)))))))))))))..))))).. ( -48.60) >DroSec_CAF1 862 120 + 1 GUAUUUCUUUGUAUUUUACGAUUCGGUUUUUGGGCGUGUCCUUGCCAGGCUUUUGGCCGCAUUAAGUGCACAGUUGCGUGCACACACGCCCAACCCGUUCGAAGGUGUAAAAGGGGGCGU ((.(..((((..(((((.(((..(((...((((((((((...(((..(((.....))))))....((((((......)))))))))))))))).))).))))))))...))))..))).. ( -45.90) >DroEre_CAF1 873 119 + 1 GCUUUUCCUUGUAUUUUACGGUUCGGUUUUUGGGCGUGUCCUUGCCAGGCUU-UGGCCGCAUUAAGUGCACAGUUGCGUGCACACACGCCCAACCCGUUCGAAGGUGUAAAAGGGGGCGU (((..(((((.((((((.(((..(((...((((((((((...(((..(((..-..))))))....((((((......)))))))))))))))).))).)))))))))...)))))))).. ( -48.50) >consensus GUUUUUCUUUGUAUUUUACGAUUCGGUUUUUGGGCGUGUCCUUGCCAGGCUUUUGGCCGCAUUAAGUGCACAGUUGCGUGCACACACGCCCAACCCGUUCGAAGGUGUAAAAGGGGGCGU (((((..((((((((((.(((..(((...((((((((((...(((..(((.....))))))....((((((......)))))))))))))))).))).)))))))))))))..))))).. (-47.07 = -47.30 + 0.23)
Location | 15,749,101 – 15,749,221 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -41.16 |
Consensus MFE | -39.54 |
Energy contribution | -39.32 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -3.39 |
Structure conservation index | 0.96 |
SVM decision value | 2.12 |
SVM RNA-class probability | 0.988514 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15749101 120 - 23771897 ACGCCCCCUUUUACACCUUCGAACGGGUUGGGCGUGUGUGCACGCAACUGUGCACUUAAUGCGGCCAAAAGCCUGGCAAGGACACGCCCAAAAACCGAAUCGUAAAAUACAAAGAAAAAC .......((((........(((.(((.(((((((((((((((((....)))))))........((((......))))....))))))))))...)))..)))........))))...... ( -41.09) >DroSec_CAF1 862 120 - 1 ACGCCCCCUUUUACACCUUCGAACGGGUUGGGCGUGUGUGCACGCAACUGUGCACUUAAUGCGGCCAAAAGCCUGGCAAGGACACGCCCAAAAACCGAAUCGUAAAAUACAAAGAAAUAC .......((((........(((.(((.(((((((((((((((((....)))))))........((((......))))....))))))))))...)))..)))........))))...... ( -41.09) >DroEre_CAF1 873 119 - 1 ACGCCCCCUUUUACACCUUCGAACGGGUUGGGCGUGUGUGCACGCAACUGUGCACUUAAUGCGGCCA-AAGCCUGGCAAGGACACGCCCAAAAACCGAACCGUAAAAUACAAGGAAAAGC ......((((.((......((..(((.(((((((((((((((((....)))))))........((((-.....))))....))))))))))...)))...)).....)).))))...... ( -41.30) >consensus ACGCCCCCUUUUACACCUUCGAACGGGUUGGGCGUGUGUGCACGCAACUGUGCACUUAAUGCGGCCAAAAGCCUGGCAAGGACACGCCCAAAAACCGAAUCGUAAAAUACAAAGAAAAAC .......((((........((..(((.(((((((((((((((((....)))))))........((((......))))....))))))))))...)))...))........))))...... (-39.54 = -39.32 + -0.22)
Location | 15,749,141 – 15,749,261 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -54.23 |
Consensus MFE | -52.53 |
Energy contribution | -52.87 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.05 |
Mean z-score | -2.04 |
Structure conservation index | 0.97 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.885951 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15749141 120 + 23771897 CUUGCCAGGCUUUUGGCCGCAUUAAGUGCACAGUUGCGUGCACACACGCCCAACCCGUUCGAAGGUGUAAAAGGGGGCGUGGCCGGUCGAAGGUGACGCCACGGGGCGCCCGGUAAGCAA ((((((.(((.(((((((((.....((((((......)))))).(((((((.((((.......)).))......)))))))).))))))))(....)(((....)))))).))))))... ( -55.20) >DroSec_CAF1 902 120 + 1 CUUGCCAGGCUUUUGGCCGCAUUAAGUGCACAGUUGCGUGCACACACGCCCAACCCGUUCGAAGGUGUAAAAGGGGGCGUGGCCGGUCGGAGGUGACGCCACGGGGCGCCCGGUAAGCAA ((((((.(((.(((((((((.....((((((......)))))).(((((((.((((.......)).))......)))))))).))))))))(....)(((....)))))).))))))... ( -54.80) >DroEre_CAF1 913 119 + 1 CUUGCCAGGCUU-UGGCCGCAUUAAGUGCACAGUUGCGUGCACACACGCCCAACCCGUUCGAAGGUGUAAAAGGGGGCGUGGCCGGUCGGAGGUGACGCCACGGGGCGCCCAGCAAGCAA (((((..(((((-(((((((.....((((((......)))))).(((((((.((((.......)).))......)))))))).))))))))(....)(((....))))))..)))))... ( -52.70) >consensus CUUGCCAGGCUUUUGGCCGCAUUAAGUGCACAGUUGCGUGCACACACGCCCAACCCGUUCGAAGGUGUAAAAGGGGGCGUGGCCGGUCGGAGGUGACGCCACGGGGCGCCCGGUAAGCAA ((((((.(((((((((((((.....((((((......)))))).(((((((.((((.......)).))......)))))))).))))))))).....(((....)))))).))))))... (-52.53 = -52.87 + 0.34)
Location | 15,749,141 – 15,749,261 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -49.73 |
Consensus MFE | -47.65 |
Energy contribution | -47.43 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.70 |
Structure conservation index | 0.96 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.688809 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15749141 120 - 23771897 UUGCUUACCGGGCGCCCCGUGGCGUCACCUUCGACCGGCCACGCCCCCUUUUACACCUUCGAACGGGUUGGGCGUGUGUGCACGCAACUGUGCACUUAAUGCGGCCAAAAGCCUGGCAAG ...(((.(((((((((....)))(((......))).(((((((((((((.((.(......))).)))..))))))..(((((((....))))))).......))))....)))))).))) ( -48.40) >DroSec_CAF1 902 120 - 1 UUGCUUACCGGGCGCCCCGUGGCGUCACCUCCGACCGGCCACGCCCCCUUUUACACCUUCGAACGGGUUGGGCGUGUGUGCACGCAACUGUGCACUUAAUGCGGCCAAAAGCCUGGCAAG ...(((.(((((((((....)))(((......))).(((((((((((((.((.(......))).)))..))))))..(((((((....))))))).......))))....)))))).))) ( -48.40) >DroEre_CAF1 913 119 - 1 UUGCUUGCUGGGCGCCCCGUGGCGUCACCUCCGACCGGCCACGCCCCCUUUUACACCUUCGAACGGGUUGGGCGUGUGUGCACGCAACUGUGCACUUAAUGCGGCCA-AAGCCUGGCAAG ...(((((..((((((....)))(((......))).(((((((((((((.((.(......))).)))..))))))..(((((((....))))))).......)))).-..)))..))))) ( -52.40) >consensus UUGCUUACCGGGCGCCCCGUGGCGUCACCUCCGACCGGCCACGCCCCCUUUUACACCUUCGAACGGGUUGGGCGUGUGUGCACGCAACUGUGCACUUAAUGCGGCCAAAAGCCUGGCAAG ...(((.(((((((((....)))(((......))).(((((((((((((.((.(......))).)))..))))))..(((((((....))))))).......))))....)))))).))) (-47.65 = -47.43 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:49 2006