Locus 5818

Sequence ID 3L_DroMel_CAF1
Location 15,746,743 – 15,746,846
Length 103
Max. P 0.711284
window9242

overview

Window 2

Location 15,746,743 – 15,746,846
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 92.82
Mean single sequence MFE -25.04
Consensus MFE -20.92
Energy contribution -19.60
Covariance contribution -1.32
Combinations/Pair 1.26
Mean z-score -1.42
Structure conservation index 0.84
SVM decision value 0.38
SVM RNA-class probability 0.711284
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15746743 103 + 23771897
AUCAAAUGAAAGUUGAUAGGCUAAUAAAAUCGGGAUUGGGUUGGGCUCUGGAAAUUAUUAGGGUAAUUCUUAAAGAUGUCUUAGGGCCUUUGUGCAACCAUUA
(((((.(....))))))...............((.(((.(..((((((((((.(((.((((((....)))))).))).)).))))))))...).))))).... ( -23.00)
>DroSec_CAF1 61932 103 + 1
AUCAAAUGAAAGUUGAUAGGCUAAUAAAAUCGGGAUUGGUUUGGGCUCUGGAAAUUAUUGGGGUAAUUCUUAAAGAUGUCUUAGGGCCUUUGUGCAGCCAUUA
(((((.(....)))))).((((.(((((((((....))))))((((((((((.(((.((((((....)))))).))).)).)))))))).)))..)))).... ( -25.90)
>DroSim_CAF1 64100 103 + 1
AUCAAAUGAAAGUUGAUAGGCUAAUAAAAUCGGGAUUGGUUUGGGCUCUGGAAAUUAUUGGGGUAAUUCUUAAAGAUGUCUUAGGGCCUUUGUGCAGCCAUUA
(((((.(....)))))).((((.(((((((((....))))))((((((((((.(((.((((((....)))))).))).)).)))))))).)))..)))).... ( -25.90)
>DroEre_CAF1 53167 103 + 1
AUCAAAUGAAAGUUGAUAGGCCAAUAAAAUCGGGAUUGGGCUGGGCUUUGGAAAAUAUUGGGGUAAUUCUUGAAGAUUUCCUAAGGCCUUUGUGCAGCCAUUA
....((((...((((.(((.(((((.........))))).)))(((((((((((.(.(..(((....)))..).).))))).))))))......)))))))). ( -26.60)
>DroYak_CAF1 162297 103 + 1
AUCAAAUGAAAGUUGAUAGGCUAAUAAAAUCGGGAUUGGGCUGGGUUUAGGAAAAUAUUGGGGUAAUUCUUGGGGAUUUCUUAAGGCCUUUGUGCAGCCAUUA
(((((.(....))))))...............((.(((.((.((.(((((((((...(..(((....)))..)...))))))))).))...)).))))).... ( -23.80)
>consensus
AUCAAAUGAAAGUUGAUAGGCUAAUAAAAUCGGGAUUGGGUUGGGCUCUGGAAAUUAUUGGGGUAAUUCUUAAAGAUGUCUUAGGGCCUUUGUGCAGCCAUUA
....((((...((((.(((.(((((.........))))).)))(((((((((.(((.((((((....)))))).))).))).))))))......)))))))). (-20.92 = -19.60 +  -1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:40 2006