Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,743,051 – 15,743,147 |
Length | 96 |
Max. P | 0.860991 |
Location | 15,743,051 – 15,743,147 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 92.26 |
Mean single sequence MFE | -21.28 |
Consensus MFE | -19.14 |
Energy contribution | -18.90 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.24 |
Mean z-score | -1.38 |
Structure conservation index | 0.90 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.860991 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15743051 96 - 23771897 AGGUAAAGGUAAAGG-AAAAUUGAAAGGUAAAUUCAAAGCUGAAGUGAAAGACAUUGAUUGGGCUUCCCUUUCGGCGUUUGAGAUAGACAGUUCUUA ...............-......(((..((...(((((((((((((.(.(((.((.....))..))).).))))))).))))))....))..)))... ( -17.90) >DroSec_CAF1 58227 97 - 1 AGGUAAAGGUAAAGGUAAAAUUGAAAGGUAAAUUCAAAGCUGAAGGGAAAGACAUUGAUUGGGCUUCUCUUUCGGCGUUUGAGAUAGACAGUUCUUA ......................(((..((...((((((((((((((..(((.((.....))..)))..)))))))).))))))....))..)))... ( -23.30) >DroSim_CAF1 60406 97 - 1 AGGUAAAGGUAAAGGUAAAAUUGAAAGGUAAAUUCAAUGCUGAAGGGAAAGACAUUGAUUGGGCUUCUCUUUCGGCGUUUGAGAUAGACAGUUCUUA ......................(((..((...((((((((((((((..(((.((.....))..)))..))))))))).)))))....))..)))... ( -23.10) >DroEre_CAF1 49623 96 - 1 AGGAAAAGGUAGAGGU-AAAUUGAAAGGUAAAUUCAAAGCUGGGGUGAAAGACAUUGAUUGGGCUUCUCUUUCGGCGUUUGAGCUAUGCAGUUCUUG (((((...(((..(((-..(((....)))....(((((((((..(.(((((.((.....))..))).)))..)))).)))))))).)))..))))). ( -20.00) >DroYak_CAF1 158581 95 - 1 AGGAAAAGGUA-AGGU-AAAUUGAAAGGUAAAUUCCAAGCCGGAGGGAAAGACAUUGAUUGGGCUUCUCUUUCGGUGUUUGAGAUAGACAGUUCUUA (((((...((.-..((-...(..((.((......))..((((((((..(((.((.....))..)))..)))))))).))..).))..))..))))). ( -22.10) >consensus AGGUAAAGGUAAAGGUAAAAUUGAAAGGUAAAUUCAAAGCUGAAGGGAAAGACAUUGAUUGGGCUUCUCUUUCGGCGUUUGAGAUAGACAGUUCUUA ......................(((..((...(((((((((((((((.(((.((.....))..))).))))))))).))))))....))..)))... (-19.14 = -18.90 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:38 2006