Locus 5814

Sequence ID 3L_DroMel_CAF1
Location 15,739,219 – 15,739,317
Length 98
Max. P 0.626349
window9236

overview

Window 6

Location 15,739,219 – 15,739,317
Length 98
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 70.11
Mean single sequence MFE -26.92
Consensus MFE -10.48
Energy contribution -9.48
Covariance contribution -1.00
Combinations/Pair 1.30
Mean z-score -1.80
Structure conservation index 0.39
SVM decision value 0.19
SVM RNA-class probability 0.626349
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15739219 98 - 23771897
CAUAACAAUGGA---GUGCUCGAGAGC----AACUUAAUGGCACAACAUUGUCUUGU----------CCGAAAUGCUAAUGCUAAUUUGCAUUG---GUUGCG--CUAAAACUUUGGAGU
((..((((((..---(((((.(((...----..)))...)))))..))))))..))(----------(((((..((((((((......))))))---))....--.......)))))).. ( -27.82)
>DroVir_CAF1 84545 112 - 1
AAUAACAAUGCAGA-GAGCUUCGGAGC----AUCUUAAUGUUAUACCAUUGUCUAGCAGCAGAACGCACAAAAUGCUAAUGCUCAUUUGCAUUACAAGUUGUGG-GCAGAAGCU--AUGU
.........(((..-.(((((((((((----((....)))))...))..((((((.((((.....(((.....)))((((((......))))))...)))))))-)))))))))--.))) ( -30.70)
>DroWil_CAF1 119894 96 - 1
CAUAACAAUGGAAAAGUUUUCAAGAGCUUGGUACUUAAUGAUAUACCAUUGUCUCGG----------UUAAAAUGCUAAUGCUAAUUUGCAUUA---GUUGUG-----------UUGCGU
....(((((((..((((((....)))))).((((.....).))).)))))))....(----------(......((((((((......))))))---))....-----------..)).. ( -21.10)
>DroYak_CAF1 155115 98 - 1
CAUAACAAUGGA---GUGCUCAAGAGC----AACUUAAUGGCACAACAUUGUCUUGU----------CCGAAAUGCUAAUGCUAAUUUGCAUUG---GUUGCG--CUAAAACUUUGGAGU
((..((((((..---(((((.(((...----..)))...)))))..))))))..))(----------(((((..((((((((......))))))---))....--.......)))))).. ( -27.42)
>DroMoj_CAF1 99220 115 - 1
CAUAACAAUGCAGA-GCGUUCCAGAGCUUC-AUCUUAAUGUUAUACCAUUGUCUAGGAGCAGAGCGCACAAAAUGCUAAUGUUCAUUUGCAUUACGAGUUGUGG-CCAAAAGUU--ACGU
((((((((((((((-((((((....(((((-....(((((......)))))....))))).)))))).......((....))...))))))))....)))))).-.........--.... ( -27.60)
>DroAna_CAF1 50631 99 - 1
CAUAACAAUGGG---G-GCCUGAGAGC----AACUUAAUGGCACAACAUUGUCUUCG----------CCGAAAUGCUAAUGCUAAUUUGCAUUG---GUUGCGCACUCAAACUUUCGAGU
....((((((..---(-(((((((...----..))))..))).)..))))))....(----------(.(....((((((((......))))))---))..)))((((........)))) ( -26.90)
>consensus
CAUAACAAUGGA___GUGCUCAAGAGC____AACUUAAUGGCACAACAUUGUCUUGG__________CCAAAAUGCUAAUGCUAAUUUGCAUUA___GUUGCG__CUAAAACUUU_GAGU
....((((((.......(((...(((.......)))...)))....))))))................((.(((..((((((......))))))...))).))................. (-10.48 =  -9.48 +  -1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:35 2006