Locus 5813

Sequence ID 3L_DroMel_CAF1
Location 15,737,480 – 15,737,588
Length 108
Max. P 0.817662
window9235

overview

Window 5

Location 15,737,480 – 15,737,588
Length 108
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 82.58
Mean single sequence MFE -37.50
Consensus MFE -23.52
Energy contribution -24.52
Covariance contribution 1.00
Combinations/Pair 1.21
Mean z-score -2.87
Structure conservation index 0.63
SVM decision value 0.67
SVM RNA-class probability 0.817662
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15737480 108 - 23771897
UGAAAUGCAAAUCUGGCAUCACUAUUU-----UGUUGAUGGGAUGGAGUGCCUGC-GCCAGGACGAAGGUUUGUCUGACUCGGUUUAAAUGUAAGCGAGGCAGGCAAAAGCGUU
...(((((........((((.(((((.-----....)))))))))...(((((((-....((((((....))))))..((((.((.......)).)))))))))))...))))) ( -35.60)
>DroSec_CAF1 52702 108 - 1
UCAAAUGGAAGGGUGGCACCACUGUUU-----UGUUGAUAGGAUGGAGUGCCUGC-GCCAGGACGAAGGUUUGUCUGUCUCGGUUUAAAUGUAAGCGAGGCAGGCAAAAGCGUU
..........((((((((((.(((((.-----....)))))....).))))).))-.))..((((....(((((((((((((.((.......)).)))))))))))))..)))) ( -39.30)
>DroSim_CAF1 54655 108 - 1
UCAAUUGCAAGGAUGGCAUCACUGUUU-----UGUUGAUGGGAUGGAGUGCCUGC-GCCAGGACGAAGGUUUGUCUGUCUCGGUUUAAAUGUAAGCGAGGCAGGCAAAAGCGUU
......(((.((((..((((.(((((.-----....)))))))))..)).)))))-.....((((....(((((((((((((.((.......)).)))))))))))))..)))) ( -37.00)
>DroEre_CAF1 43500 106 - 1
UCAAAUGCAGAUCUGGCAUCACUGUUU-----UGCUGAUGGCAAGGAGUUGCUG---GCAGGACGAAGGUUUGUCUGUCUCGGUUUAAAUGUAAGCGAGGCAGGCAAAAGCGUU
...(((((.(.((((.((.((((.(((-----(((.....)))))))).)).))---.)))).).....(((((((((((((.((.......)).))))))))))))).))))) ( -37.90)
>DroYak_CAF1 153084 105 - 1
UCAAAUGCAAAUCUGGCAUCACUGCUU-----UGUUGAUGGAAUGGAGUUGCUG---CCAGGAAGAAGGUUUGUCUG-CUCUGUUUAAAUGUAAGCGAGGCAGGCAAAAGCGUU
...(((((...(((((((.((..((((-----..((.....))..)))))).))---))))).......((((((((-(..((((((....))))))..))))))))).))))) ( -39.10)
>DroAna_CAF1 49089 113 - 1
UUAUUCGCACCACUGGUACAAAUAUUUGUAUGUAUUUGUGAGAUGAAGCUCCUUCUGCCAGGACGAAAGUUUGUCUGCUUCGGU-UAAGUGUAAGCGACGCAGGCAAAAGUGUU
......((((..(((((((((((((......))))))))(((......))).....)))))(((....)))(((((((.(((.(-((....))).))).)))))))...)))). ( -36.10)
>consensus
UCAAAUGCAAAUCUGGCAUCACUGUUU_____UGUUGAUGGGAUGGAGUGCCUGC_GCCAGGACGAAGGUUUGUCUGUCUCGGUUUAAAUGUAAGCGAGGCAGGCAAAAGCGUU
............(((((((((..............))))(((........)))...)))))((((....((((((((((((.(((((....)))))))))))))))))..)))) (-23.52 = -24.52 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:34 2006