Locus 5812

Sequence ID 3L_DroMel_CAF1
Location 15,726,587 – 15,726,687
Length 100
Max. P 0.956057
window9234

overview

Window 4

Location 15,726,587 – 15,726,687
Length 100
Sequences 3
Columns 100
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -20.56
Consensus MFE -20.16
Energy contribution -20.16
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.29
Structure conservation index 0.98
SVM decision value 1.46
SVM RNA-class probability 0.956057
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15726587 100 - 23771897
CCACCCCUUCCACCAAUCCUUACUUCCUCGUUCCCCGCCCCACUUGACCAACAACAAACUGGUUAUCAUAAUUAACGGGCGCGAACGGGCUAUGUCCAAA
..........................(((((((..(((((....((((((.........))))))...........))))).)))))))........... ( -20.16)
>DroSec_CAF1 41890 100 - 1
CCGCCCCUACCACCUAUCCAUGCUUCCUCGUUCCCCGCCCCACUUGACCAACAACAAACUGGUUAUCAUAAUUAACGGGCGCGAACGGGCUAUGUCCAAA
..((((....((........)).......((((..(((((....((((((.........))))))...........))))).)))))))).......... ( -20.76)
>DroSim_CAF1 43815 100 - 1
CCGCCCCUACCACCUAUCCAUGCUUCCUCGUUCCCCGCCCCACUUGACCAACAACAAACUGGUUAUCAUAAUUAACGGGCGCGAACGGGCUAUGUCCAAA
..((((....((........)).......((((..(((((....((((((.........))))))...........))))).)))))))).......... ( -20.76)
>consensus
CCGCCCCUACCACCUAUCCAUGCUUCCUCGUUCCCCGCCCCACUUGACCAACAACAAACUGGUUAUCAUAAUUAACGGGCGCGAACGGGCUAUGUCCAAA
..........................(((((((..(((((....((((((.........))))))...........))))).)))))))........... (-20.16 = -20.16 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:33 2006