Locus 5811

Sequence ID 3L_DroMel_CAF1
Location 15,725,814 – 15,725,904
Length 90
Max. P 0.534694
window9233

overview

Window 3

Location 15,725,814 – 15,725,904
Length 90
Sequences 6
Columns 90
Reading direction reverse
Mean pairwise identity 91.48
Mean single sequence MFE -25.73
Consensus MFE -21.83
Energy contribution -22.13
Covariance contribution 0.31
Combinations/Pair 1.14
Mean z-score -1.55
Structure conservation index 0.85
SVM decision value 0.00
SVM RNA-class probability 0.534694
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15725814 90 - 23771897
UUAAAUCAUAUUUUCUGCCAGCGCCUCUAGGCGCGACAUUUUCGUCAGCAAGUAGCAACGCCCGCCUCGGAUUUCCCGGGAAAAUUGCAG
...............(((..(((((....)))))(((......))).)))....((((..((((....((....))))))....)))).. ( -26.40)
>DroSec_CAF1 41156 90 - 1
UUAAAUCAUAUUUUCUGCCAGCGCCUCUAGGCGCGACAUUUUCGUCAGCAAGUAGCAACGCCCGCCUCGGAUUUCCCGGGAAAAUUGCAG
...............(((..(((((....)))))(((......))).)))....((((..((((....((....))))))....)))).. ( -26.40)
>DroSim_CAF1 42496 90 - 1
UUAAAUCAUAUUUUCUGCCAGCGCCUCUAGGCGCGACAUUUUCGUCAGCAAGUAGCAACGCCCGCCUCGGAUUUCCCGGGAAAAUUGCAG
...............(((..(((((....)))))(((......))).)))....((((..((((....((....))))))....)))).. ( -26.40)
>DroEre_CAF1 32168 90 - 1
CUAAAUAAUAUUUUCCGCCAGCGCCUCUAGGCGCGACAUUUUCGUCAGCAAGUAGCAACGCCCGCCUCGGAUUUCCCGGGAAAAUUGCAG
................((..(((((....)))))(((......))).)).....((((..((((....((....))))))....)))).. ( -25.90)
>DroYak_CAF1 141417 90 - 1
CCAAAUAAUAUUUUCUGCCAGCGCCUCUAGGCGCGACAUUUUCGUCAGCAAGUAGCAACGCCCGCCUCGGAUUUCCCGGGAAAAUUGCAG
...............(((..(((((....)))))(((......))).)))....((((..((((....((....))))))....)))).. ( -26.40)
>DroAna_CAF1 38413 90 - 1
UAAAAUCAUAUUUUUUGUCAGCGCCUUUAGUCGCGACAUUUUUGUCAGCAAGUGGCUGGGCCUUCCUAGGAUUUCAGAUGAAAAGUGCAG
........(((((((..((((.((((..((((((((((....)))).....))))))))))))((....)).....))..)))))))... ( -22.90)
>consensus
UUAAAUCAUAUUUUCUGCCAGCGCCUCUAGGCGCGACAUUUUCGUCAGCAAGUAGCAACGCCCGCCUCGGAUUUCCCGGGAAAAUUGCAG
...............(((..(((((....)))))(((......))).)))....((((..((((....((....))))))....)))).. (-21.83 = -22.13 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:32 2006