| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 15,720,307 – 15,720,411 |
| Length | 104 |
| Max. P | 0.832935 |
| Location | 15,720,307 – 15,720,411 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 80.87 |
| Mean single sequence MFE | -26.20 |
| Consensus MFE | -20.09 |
| Energy contribution | -20.60 |
| Covariance contribution | 0.51 |
| Combinations/Pair | 1.34 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.832935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15720307 104 - 23771897 -ACUCCAUUCCAUCAGAAUUCUUUGAAUGGCCCUCGGGGGCUUUAUGUUAGUUCCCGGCUUGAUUGACACUUUUGUGUCUCGUCAUGCGUUUAAAUUGUGAAAAA----- -...((((((....((....))..))))))....((((((((.......))))))))((.((((.(((((....)))))..)))).)).................----- ( -29.80) >DroSec_CAF1 35706 104 - 1 -ACUCCAUUCCAUCAGAAUUCCUUGAAUGACCCUCGGGAGCUUUAUGUUAGUUUCCGGCUUGAUUGACACUUUUGUGUCUCGUCAUGCGUUUAAAUUGUGAAAAA----- -...........(((.((((...(((((......((((((((.......))))))))((.((((.(((((....)))))..)))).))))))))))).)))....----- ( -27.40) >DroEre_CAF1 26846 98 - 1 -ACUCCAUUCCAUCAGAAUUCCUCAAAGGG-CCUCGGGCGCUUU-----AGUUCCCGGCUUGAUUGACACUUUUGUGUCUCGUCAUCCGCUUAAAUUGUGAAAAA----- -...........(((.((((....((((.(-((...))).))))-----......(((..((((.(((((....)))))..)))).)))....)))).)))....----- ( -23.80) >DroYak_CAF1 72812 99 - 1 -ACUCCAUUCCAUCAGAAUUCCUUGAAUGGCCCUCGGGGGCUUU-----AGUUCCCGGCUUGAUUGACACUUUUGUGUCUCGUCAUCCGUUUAAAUUGUGAAAAA----- -...........(((.((((...(((((((...((((((((...-----.))))))))..((((.(((((....)))))..)))).))))))))))).)))....----- ( -29.60) >DroAna_CAF1 33039 100 - 1 -AUCACCUCGCAUCAGUGUCUCUUGAAUGGCCCUCUGGGGCUUU----UGGCUCCUCGCUUGAUUGACACUUUUGUGUUGUGUCAUCCGUUUAAAUUGUGAAGAA----- -..(((..((((..((((((..(..(..(((((....)))))..----..((.....)))..)..))))))..))))..)))((.((((.......)).)).)).----- ( -26.70) >DroPer_CAF1 50236 105 - 1 AUUUCCAUUCCAUCACAAUUCCUUGAAUGGCCCUCGGGGCCUUU-----GGCCUUUCGCUUGAUUGACAAUUUUGUGUUGUCUCAUCUGUUUAAAUUAUGAAUAAAAAGG .........((((((........)))..(((((...)))))..)-----))(((((.....(((.((((((.....))))))..)))((((((.....)))))).))))) ( -19.90) >consensus _ACUCCAUUCCAUCAGAAUUCCUUGAAUGGCCCUCGGGGGCUUU_____AGUUCCCGGCUUGAUUGACACUUUUGUGUCUCGUCAUCCGUUUAAAUUGUGAAAAA_____ ............(((.(((...((((((((...(((((((((.......)))))))))..((((.(((((....)))))..)))).))))))))))).)))......... (-20.09 = -20.60 + 0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:31 2006