Locus 5807

Sequence ID 3L_DroMel_CAF1
Location 15,715,218 – 15,715,309
Length 91
Max. P 0.977574
window9227

overview

Window 7

Location 15,715,218 – 15,715,309
Length 91
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 93.50
Mean single sequence MFE -26.02
Consensus MFE -21.51
Energy contribution -21.68
Covariance contribution 0.17
Combinations/Pair 1.19
Mean z-score -3.11
Structure conservation index 0.83
SVM decision value 1.79
SVM RNA-class probability 0.977574
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 15715218 91 + 23771897
UGUUUGUUGUCGGUGGUUUUGCAACGUUUGUUGAUGUCGCUGCCGUUGUCAUUUGUUUGCGUUUUAAUAUGCAAAUAAAUAUUAUAG-GACA
.((((...(.(..((((...((.(((((....))))).)).))))..).)((((((((((((......))))))))))))......)-))). ( -25.90)
>DroSec_CAF1 30618 91 + 1
UGUUUGUUGUCGGUGGUUUUGCAACGUUUGUUGAUGUCGCUGCCGUUGUCAUUUGUUUGCGUUUUAAUAUGCAAAUAAAUAUAAUAG-CACA
....(((((((((..((....((((....)))).....))..))).....((((((((((((......))))))))))))...))))-)).. ( -25.90)
>DroSim_CAF1 31740 91 + 1
UGUUUGUUGUCGGUGGUUUUGCAACGUUUGUUGAUGUCGCUGCCGUUGUCAUUUGUUUGCGUUUUAAUAUGCAAAUAAAUAUAAUAG-CACA
....(((((((((..((....((((....)))).....))..))).....((((((((((((......))))))))))))...))))-)).. ( -25.90)
>DroEre_CAF1 21842 91 + 1
AGUUUGUUGUCGGUGGUUUUGCAACGUUUGCCGAUGUCGCUGCCGUUGUCAUUUGUUUGCGUUUUAAUAUGCAAAUAAAUAUAAUAG-GACA
.......((((((..((...(((.((.....)).))).))..))(((((.((((((((((((......)))))))))))))))))..-)))) ( -26.40)
>DroYak_CAF1 67676 91 + 1
UGUUUGUUGUCGGUGGUUUUGCAACGUUUGUUGCUGUCGCUGCCGUUGUCAUUUGUUUGCGUUUUAAUAUGCAAAUAAAUAUAAUAG-GACA
.......((((((..((...(((((....)))))....))..))(((((.((((((((((((......)))))))))))))))))..-)))) ( -30.60)
>DroAna_CAF1 28266 91 + 1
UGUUUGUUGUCGUCGGUUUUGCAACGU-UGCUGCUGCCACAGCCAUUGUCAUUUGUUUGCUUUUUAAUAUGCAAAUAAAUAUAAUAGGGAUA
.....(((((.(.((((...(((....-))).))))).))))).(((((.((((((((((..........)))))))))))))))....... ( -21.40)
>consensus
UGUUUGUUGUCGGUGGUUUUGCAACGUUUGUUGAUGUCGCUGCCGUUGUCAUUUGUUUGCGUUUUAAUAUGCAAAUAAAUAUAAUAG_GACA
.......((((((((((...(((.((.....)).))).))))))(((((.((((((((((((......)))))))))))))))))...)))) (-21.51 = -21.68 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:26 2006