Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 15,710,529 – 15,710,632 |
Length | 103 |
Max. P | 0.835248 |
Location | 15,710,529 – 15,710,632 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 81.10 |
Mean single sequence MFE | -29.18 |
Consensus MFE | -18.39 |
Energy contribution | -19.67 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.11 |
Mean z-score | -2.30 |
Structure conservation index | 0.63 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835248 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 15710529 103 + 23771897 AUAAUAAUAAAUAACAUGCAAACGAGGCGAAAUCAAUGUAAAACGCGUUGAAGCGUAUCAUUAGUGGGUGGAGCCACGCCCACACUCGGUCAGCCCUAUGGGU ......................(((((((...(((((((.....)))))))..))).......(((((((......))))))).))))....((((...)))) ( -31.80) >DroSec_CAF1 26013 103 + 1 AUAAUAAUAAAUAACAUGCAAACGAGGCGAAAUCAAUGUAAAACGCGUUGAAGCGUAUCAUUAGUCGGUGGGGCCACGCCCACUCUCGGCCAGCCCUAUGGGU .......................((.(((...(((((((.....)))))))..))).)).....((.(((((((...(((.......)))..))))))).)). ( -27.80) >DroEre_CAF1 17289 103 + 1 AUAAUAAUAAAUAACAUGCAAACGGGGCGAAAUCAAUGUAAAACGCGUUGAAGCGUAUCAUUAGUGGGCGGGGCCACGCCCACGAGCAGGCCGCCCGGUGGGU .................((..((.(((((.....((((....((((......))))..)))).(((((((......)))))))........))))).))..)) ( -37.00) >DroYak_CAF1 62974 103 + 1 AUAAUAAUAAAUAACAUGCAAACGGGGCGAAAUCAAUGUAAAACGCGUUGAAGCGUAUCAUUAGUGGGUGGGGCCACGCCCACAAUGGGGCAGCCCGGUGGGU .................((..((.((((....(((((((.....))))))).((...(((((.(((((((......)))))))))))).)).)))).))..)) ( -37.80) >DroMoj_CAF1 66361 80 + 1 AUAAUAAUAAAUAACUCGUCAACGAGGCGAAAUCAAUGUAAAACGCGUCGAAGCGUAUCAUUAGUGUGUGGG-----------------------CGUUGUGU ...............(((((.....)))))...((((((...((((......)))).((((......)))))-----------------------)))))... ( -16.40) >DroAna_CAF1 23034 92 + 1 AUAAUAAUAAAUAACAUGCAAACGAGGCGAAAUCAAUGUAAAACGCGUUGAAGCGUAUCAUUAGCGGGCGGUGCCACGCCCACACUCUGG-----------UA .................((.((.((.(((...(((((((.....)))))))..))).)).)).))(((((......))))).........-----------.. ( -24.30) >consensus AUAAUAAUAAAUAACAUGCAAACGAGGCGAAAUCAAUGUAAAACGCGUUGAAGCGUAUCAUUAGUGGGUGGGGCCACGCCCACACUCGGGCAGCCCGAUGGGU .......................((.(((...(((((((.....)))))))..))).))....(((((((......))))))).................... (-18.39 = -19.67 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:00:24 2006